PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A08G1257

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Trihelix

Protein Properties

Length: 374aa MW: 41726.9 Da PI: 9.8582

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A08G1257	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	68.5	1.3e-21	56	147	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqlea 87 +W+++e+ aLi+a+r+++ +lrrg+lk+ +W+ev++++ ++++qC++k+e+l+kry+ + +++++ s+ +s++++f++++a Gh_A08G1257 56 CWSHDETVALIDAYRDKWYTLRRGNLKASHWQEVADAVtrrcPMATPPKTAVQCRHKMEKLRKRYRTEIQRARSMpVSRFVSSWVHFKRMDA 147 7***********************************64442233489*********************97799*********85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	8.5E-23	55	148	No hit	No description
SMART	SM00595	1.9E-13	64	153	IPR006578	MADF domain

Sequence ? help Back to Top
Protein Sequence Length: 374 aa Download sequence Send to blast
MSNPSSPSPE QGIPSNTSPP PPSETLLSLP APPTSRSTPS ATATVTPNPR RLPPPCWSHD 60 ETVALIDAYR DKWYTLRRGN LKASHWQEVA DAVTRRCPMA TPPKTAVQCR HKMEKLRKRY 120 RTEIQRARSM PVSRFVSSWV HFKRMDAMEK GPNVKADYNS DSPDDENGDD EEDGQDQEFY 180 DDGYKNGNLN TRSVQKLYRN EIGNNGGSVS GDGNSGGFRI RIPTGVSIAQ PGPRFYGKID 240 HKYGANPNPN PNINANSHPS KGNFGGSGSG SAYGTRILRG FEDLPEKTAA SGKRERERDA 300 VTEMVSAIKV LGDGFVRMEQ MKMEMAREIE TMRMEMEMKR TEVILESQQR IVEAFAKAVS 360 ERKKKPKRMP LPQS

Sequence ? help Back to Top

Protein Sequence Length: 374 aa Download sequence Send to blast

MSNPSSPSPE QGIPSNTSPP PPSETLLSLP APPTSRSTPS ATATVTPNPR RLPPPCWSHD  60
ETVALIDAYR DKWYTLRRGN LKASHWQEVA DAVTRRCPMA TPPKTAVQCR HKMEKLRKRY  120
RTEIQRARSM PVSRFVSSWV HFKRMDAMEK GPNVKADYNS DSPDDENGDD EEDGQDQEFY  180
DDGYKNGNLN TRSVQKLYRN EIGNNGGSVS GDGNSGGFRI RIPTGVSIAQ PGPRFYGKID  240
HKYGANPNPN PNINANSHPS KGNFGGSGSG SAYGTRILRG FEDLPEKTAA SGKRERERDA  300
VTEMVSAIKV LGDGFVRMEQ MKMEMAREIE TMRMEMEMKR TEVILESQQR IVEAFAKAVS  360
ERKKKPKRMP LPQS

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.2829	0.0	boll\| ovule\| root

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017626273.1	0.0	PREDICTED: trihelix transcription factor ASIL2
TrEMBL	A0A2P5SLM0	0.0	A0A2P5SLM0_GOSBA; Uncharacterized protein
STRING	Gorai.004G167100.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8963	25	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	2e-81	Trihelix family protein