PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A08G1327
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Trihelix
Protein Properties Length: 261aa    MW: 31329.1 Da    PI: 8.205
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A08G1327genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix77.52.1e-24687186
     trihelix  1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
                 +W ++e+++Li +r e+e+++ ++k +k+lWe vs++m++rg++r+p qCk+kw+nl +ryk  ++++ ++      ++p+f++l+
  Gh_A08G1327  6 QWGQEETRELIFIRGELERDFTAAKHNKTLWEIVSARMKDRGYTRTPDQCKSKWKNLLNRYKGKETSDPEN----GCQFPFFEELH 87
                 7**************************************************************99999985....44689***998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500908.258163IPR017877Myb-like domain
SMARTSM007172.1E-4365IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-5465IPR009057Homeodomain-like
PfamPF138378.4E-22688No hitNo description
SuperFamilySSF466892.61E-5688IPR009057Homeodomain-like
CDDcd122039.75E-22670No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MLGSGQWGQE ETRELIFIRG ELERDFTAAK HNKTLWEIVS ARMKDRGYTR TPDQCKSKWK  60
NLLNRYKGKE TSDPENGCQF PFFEELHAVF TERAKTMQRR LLEPEAGSSS TQAKKKVKRT  120
TTERSSDEFS EGEDEDESEE EKPARGTSRK RKKSDSTVVD KSPRPNSGTR TGLQEMLREF  180
FDQQLRMEMQ WREMMEKRAQ ERQLFEQEWQ QWMEKLERER LMVEKAWRER EEEMRRREES  240
RAERRDSLLT TLLNKLINDN N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ebi_A4e-15785786DNA binding protein GT-1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1148152RKRKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.171520.0boll
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF6517840.0EF651784.1 Gossypium hirsutum transcription factor TF2 (TF2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016717184.10.0PREDICTED: trihelix transcription factor GT-3b-like
TrEMBLA0A1U8LVC20.0A0A1U8LVC2_GOSHI; trihelix transcription factor GT-3b-like
STRINGGorai.004G174900.11e-160(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17512910
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38250.19e-39Trihelix family protein