PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A08G1425
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family LSD
Protein Properties Length: 147aa    MW: 15157.6 Da    PI: 7.9166
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A08G1425genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD146.37.1e-152852125
      zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                 C+gCr+lL+YP+GA+sV+Ca+C+++
  Gh_A08G1425 28 CSGCRNLLMYPAGATSVCCAVCNAI 52
                 ***********************97 PP
2zf-LSD146.84.9e-156791125
      zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                 CggC+tlL+Y rGA+sV+C++C+tV
  Gh_A08G1425 67 CGGCHTLLMYIRGATSVQCSCCHTV 91
                 ************************9 PP
3zf-LSD141.81.7e-13105129125
      zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                  Cg+Cr lL+Y +GA+sV+Ca+C++V
  Gh_A08G1425 105 CGNCRMLLMYQYGARSVKCAVCNFV 129
                  ***********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.90.10.109.3E-422126No hitNo description
TIGRFAMsTIGR010533.3E-142555IPR005735Zinc finger, LSD1-type
PfamPF069434.0E-122852IPR005735Zinc finger, LSD1-type
SuperFamilySSF486956.28E-528126IPR011031Multihaem cytochrome
TIGRFAMsTIGR010538.9E-156493IPR005735Zinc finger, LSD1-type
PfamPF069431.3E-126791IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010534.1E-12102132IPR005735Zinc finger, LSD1-type
PfamPF069431.0E-12105129IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0034051Biological Processnegative regulation of plant-type hypersensitive response
GO:0045595Biological Processregulation of cell differentiation
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
MPVPLAPYPT PSGSYTPPAN GAQSQLVCSG CRNLLMYPAG ATSVCCAVCN AITAVPPPGT  60
EMAQLVCGGC HTLLMYIRGA TSVQCSCCHT VNLALEANQV AHVNCGNCRM LLMYQYGARS  120
VKCAVCNFVT SVGGSASGAA EQKFNNT
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016703831.11e-102PREDICTED: protein LOL1-like
RefseqXP_016703833.11e-102PREDICTED: protein LOL1-like
RefseqXP_016703834.11e-102PREDICTED: protein LOL1-like
RefseqXP_016703835.11e-102PREDICTED: protein LOL1-like
RefseqXP_017625404.11e-102PREDICTED: protein LOL1-like
RefseqXP_017625405.11e-102PREDICTED: protein LOL1-like
RefseqXP_017625406.11e-102PREDICTED: protein LOL1-like
SwissprotQ93ZB11e-80LOL1_ARATH; Protein LOL1
TrEMBLA0A0B0PTX41e-101A0A0B0PTX4_GOSAR; Protein LOL1-like protein
TrEMBLA0A1U8KS661e-101A0A1U8KS66_GOSHI; protein LOL1-like
STRINGGorai.004G186300.12e-90(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72932643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.11e-80lsd one like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]