PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A08G1440
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ARR-B
Protein Properties Length: 554aa    MW: 61994 Da    PI: 6.66
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A08G1440genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like80.52e-25318372256
      G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ.kYRla 56 
                   +++Wt+eLH++Fv+av+qL G+++A+P++ilelmkv+gLt+++v+SHLQ kYR++
  Gh_A08G1440 318 LKVDWTTELHKKFVQAVDQL-GIDQAIPSRILELMKVEGLTRQNVASHLQqKYRMH 372
                  5899****************.****************************549**86 PP
2Response_reg23.23.4e-09201261109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTT.SEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTE CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempg.mdGlellkeireeepklpiivvtahgeeedalealkaGa 94 
                   vl+ d++ + +  +++ le  +y +v ++ +  eal+ +  +   +++ ++ +       G+++l++ +    +lp i+ +     +++ +++ +Ga
   Gh_A08G1440  20 VLLLDEDTNSAAEIKSKLEAMDY-IVYTFCNENEALAAVSSRPesFHVAIVEVCTNSnNGGFKFLETAK----DLPTIMTSNIHCISTMMKCIALGA 111
                   79999999999************.***************666666*******88777477888887654....578888887777************ PP

                   SEEEESS--HHHHHH CS
  Response_reg  95 kdflsKpfdpeelvk 109
                    +fl Kp ++++l++
   Gh_A08G1440 112 VEFLRKPLSEDKLRN 126
                   ************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23001.6E-1516136No hitNo description
SuperFamilySSF521723.13E-1516134IPR011006CheY-like superfamily
PROSITE profilePS5011019.76219132IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.3E-620127IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.30E-721131No hitNo description
PROSITE profilePS5129412.745314373IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.1E-24315374IPR009057Homeodomain-like
SuperFamilySSF466895.2E-15316374IPR009057Homeodomain-like
TIGRFAMsTIGR015572.1E-22317373IPR006447Myb domain, plants
PfamPF002498.3E-6320367IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 554 aa     Download sequence    Send to blast
MVCTRNDLSA WKDFPKGLRV LLLDEDTNSA AEIKSKLEAM DYIVYTFCNE NEALAAVSSR  60
PESFHVAIVE VCTNSNNGGF KFLETAKDLP TIMTSNIHCI STMMKCIALG AVEFLRKPLS  120
EDKLRNIWQH VVHKAFSVGG DDLSESLKPV KDYVASMLHQ QLENGECKHE DLDKIEDASM  180
IHEKDHEPSA VNNKYPAPST PQLQQGGRLI VNGDCQEHTN CSMEKESGEP DGESKSVETT  240
SGHTIAEVIA LVGQHQKPRE TMVKEEADSI DGAKGERTVD SHPQDRVHSE DSCAGADKPN  300
TVSGLHSSRP NKANRKKLKV DWTTELHKKF VQAVDQLGID QAIPSRILEL MKVEGLTRQN  360
VASHLQQKYR MHKRHILPKE DDPRWLRRDQ TQRSCHPHKP IMAFPPYHSN PVPVGPVYPM  420
WGAPHPASIQ TWGSHGYYHP WQPTESWQWK PYPGVHADAW GCPVMPIPQG NCSTFTQNGY  480
GFHCSSTMDN RSGMPQNSIQ HQPAEEVIDE VVKEAINKPW LPLPLGLKPP STDSVLAELS  540
RQGISTIPPR NQRL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A8e-15315371358ARR10-B
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.111120.0boll| leaf| root| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016705392.10.0PREDICTED: two-component response regulator-like APRR2
RefseqXP_016705393.10.0PREDICTED: two-component response regulator-like APRR2
RefseqXP_016705394.10.0PREDICTED: two-component response regulator-like APRR2
SwissprotQ6LA431e-139APRR2_ARATH; Two-component response regulator-like APRR2
TrEMBLA0A1U8KSE60.0A0A1U8KSE6_GOSHI; two-component response regulator-like APRR2
STRINGGorai.004G188300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57462747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.61e-142ARR-B family protein
Publications ? help Back to Top
  1. Gong L, et al.
    Transcriptome Profiling of the Potato (Solanum tuberosum L.) Plant under Drought Stress and Water-Stimulus Conditions.
    PLoS ONE, 2015. 10(5): p. e0128041
    [PMID:26010543]