PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A08G1584
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRF
Protein Properties Length: 257aa    MW: 27786.2 Da    PI: 8.7879
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A08G1584genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC261.6e-08136151116
          WRC   1 daepgrCrRtDGKkWR 16 
                  d+epgrCrRtDGKkWR
  Gh_A08G1584 136 DPEPGRCRRTDGKKWR 151
                  79*************9 PP
2WRC41.62.2e-131611901645
          WRC  16 RCsrrvlegkklCErHlhrgrsrsrkskee 45 
                  RCs+++++++k+CErH+hrgr+rs+k +e+
  Gh_A08G1584 161 RCSKEAVPDHKYCERHMHRGRQRSTKLVEA 190
                  9**************************997 PP
3QLQ46.31.3e-1667101337
          QLQ   3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                  FT  Qlq+L  Q l+yKy+ a++PvP++Ll++i+k
  Gh_A08G1584  67 FTIFQLQELQLQSLIYKYMEAGLPVPHHLLLPIWK 101
                  7778*****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009519.9E-665101IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166619.35566101IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088802.0E-1167100IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166720.445136190IPR014977WRC domain
PfamPF088792.8E-10161189IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MEPQDSSPLK TGHFSDLGIG LTNLGDSGNM ESNRLSGGEG SPPIGLGLEL GCGSGHTQTG  60
ITKSCGFTIF QLQELQLQSL IYKYMEAGLP VPHHLLLPIW KSVAGSLGGL HGSPYQLYYG  120
FLGCGPLQLG YKNGVDPEPG RCRRTDGKKW RSISFYFHST RCSKEAVPDH KYCERHMHRG  180
RQRSTKLVEA SQVTRTSISR NNANTNLSIS LQVDSSNNSG NGSNLSSSFT GFSPNIALLR  240
GGDSKAVPLS PQFQELL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017625396.11e-157PREDICTED: growth-regulating factor 10-like
TrEMBLA0A0B0NRG61e-156A0A0B0NRG6_GOSAR; Transmembrane 7 superfamily member 3
STRINGGorai.004G204600.11e-149(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16724712
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.17e-32growth-regulating factor 5