PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A08G1743
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 481aa    MW: 54764.5 Da    PI: 4.4939
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A08G1743genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM115.55.5e-3641342128
          NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 
                   +GfrFhPtdeel+ eyL+ k+ +++  + +vi+e+ di+++ePw+Lp +  ++++++ wyf  + + ky+++k  +r+t +gyWk tgk ++++++ 
  Gh_A08G1743   4 VKGFRFHPTDEELI-EYLQIKTFNRDSLV-QVIAEIpDICESEPWELPgRsVLQTGDRLWYFMYPPKYKYRNSKLVSRTTLEGYWKITGKARKIINSe 99 
                  68************.9******9999666.89****************6347788999***********************************99986 PP

          NAM  96 kgelvglkktLvfykg..rapkgektdWvmheyrl 128
                  +g ++g kktL fykg  +++  ++t Wvmhey+l
  Gh_A08G1743 100 TGMEIGNKKTLLFYKGqcNDKIKNNTCWVMHEYEL 134
                  7888**********9833444456899******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.59E-362156IPR003441NAC domain
PROSITE profilePS5100540.593156IPR003441NAC domain
PfamPF023651.7E-195134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MNMVKGFRFH PTDEELIEYL QIKTFNRDSL VQVIAEIPDI CESEPWELPG RSVLQTGDRL  60
WYFMYPPKYK YRNSKLVSRT TLEGYWKITG KARKIINSET GMEIGNKKTL LFYKGQCNDK  120
IKNNTCWVMH EYELKAMLDS TNSHQKTFKL CKLKKKTNIS SKEAGQLDQY SLSDLDNHVA  180
NNALLEDILD PNGSSEPEAS NNHNDVHNHC SSVDTYGDER SNQHNTVDEG EGSNISTNFV  240
NHVAEDAIPE VPSHIFKVYQ NGLEDNNWIQ DLYSTNEQDD ESWNSIITSF DETIINESSN  300
QHNIVVAEKG IETPIISYDE TITNERSNQH NIVVVEGGTE MSVISYDETV ANERSNQHNI  360
VDVDEGFEVP SNLKYLVEED TISTDLLYKD GLYSRSLFGE LLAEPEATNN LNWIQNRYIT  420
KKEDGEFLNS TLADKNKADL QEGNTQWCLA ADGEGFSLPC IGALTESSNS MEKSSKRPRR  480
M
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-25116215171NO APICAL MERISTEM PROTEIN
1ut4_B2e-25116215171NO APICAL MERISTEM PROTEIN
1ut7_A2e-25116215171NO APICAL MERISTEM PROTEIN
1ut7_B2e-25116215171NO APICAL MERISTEM PROTEIN
3swm_A3e-25116218174NAC domain-containing protein 19
3swm_B3e-25116218174NAC domain-containing protein 19
3swm_C3e-25116218174NAC domain-containing protein 19
3swm_D3e-25116218174NAC domain-containing protein 19
3swp_A3e-25116218174NAC domain-containing protein 19
3swp_B3e-25116218174NAC domain-containing protein 19
3swp_C3e-25116218174NAC domain-containing protein 19
3swp_D3e-25116218174NAC domain-containing protein 19
4dul_A2e-25116215171NAC domain-containing protein 19
4dul_B2e-25116215171NAC domain-containing protein 19
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016727768.10.0PREDICTED: putative NAC domain-containing protein 94 isoform X1
TrEMBLA0A1U8MQG10.0A0A1U8MQG1_GOSHI; putative NAC domain-containing protein 94 isoform X1
STRINGGorai.004G227000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2437734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24590.21e-32TCV-interacting protein