PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A08G1953
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 183aa    MW: 21989.5 Da    PI: 9.4911
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A08G1953genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM99.93.6e-31201471128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                  lp G+rF P+d+el+++yL +k++g +l++ +vik++d y+++P ++     k+  +++e y+F+k+++  ++ +r +r t++gyWk+ gk +e+++ 
  Gh_A08G1953  20 LPIGYRFVPRDHELISFYLFNKIKGFQLPF-DVIKNIDFYYLDPFHFSpCefKHGRKNNEAYYFTKTKEIRSKMDRIERHTRNGYWKSCGKAEEIKH- 115
                  699***************************.99**************64423444566799************************************. PP

          NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                  +++ +glk+ +vf+  r p+    +Wvmhe+++
  Gh_A08G1953 116 RDRIIGLKRLFVFH-WRIPELGFGKWVMHEFSI 147
                  8999**********.78888899********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.72E-3317175IPR003441NAC domain
PROSITE profilePS5100531.78620177IPR003441NAC domain
PfamPF023653.8E-1821147IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MAAALVSDDN FLDEYENKAL PIGYRFVPRD HELISFYLFN KIKGFQLPFD VIKNIDFYYL  60
DPFHFSPCEF KHGRKNNEAY YFTKTKEIRS KMDRIERHTR NGYWKSCGKA EEIKHRDRII  120
GLKRLFVFHW RIPELGFGKW VMHEFSIHPT FLVPHPLLDE KIKAKIHRCV ICRIVNRECS  180
YGV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A9e-192018115172Stress-induced transcription factor NAC1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012478033.11e-126PREDICTED: NAC domain-containing protein 45-like
RefseqXP_016690930.11e-126PREDICTED: NAC domain-containing protein 45-like
TrEMBLA0A2P5X6N11e-133A0A2P5X6N1_GOSBA; Uncharacterized protein
STRINGGorai.004G258200.11e-125(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17601710
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03200.12e-23NAC domain containing protein 45