PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A08G1987
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 458aa    MW: 50120.3 Da    PI: 8.3792
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A08G1987genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.51.6e-116187127
                 --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                 ++++ C+++ rtG C++G++C+F+H+p
  Gh_A08G1987 61 PGEPDCSYYIRTGLCRFGATCRFNHPP 87
                 5789*********************97 PP
2zf-CCCH30.18.3e-10121141727
                  SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   7 rffartGtCkyGdrCkFaHgp 27 
                  +++++tGtCk+G++CkF+H++
  Gh_A08G1987 121 HYYLKTGTCKFGATCKFHHPR 141
                  59*****************96 PP
3zf-CCCH36.58.2e-12163187327
                  S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                  + +C +++rtG+Ck+G++CkF+H++
  Gh_A08G1987 163 ETECAYYLRTGQCKFGSTCKFHHPQ 187
                  578********************97 PP
4zf-CCCH37.83.2e-12319345127
                  --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                  +++++C+f+++tG Ck+G+ C+F+H++
  Gh_A08G1987 319 PGQPECQFYMKTGDCKFGAVCRFHHPR 345
                  5789*********************96 PP
5zf-CCCH41.62e-13365391127
                  --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                  ++++lC+f++r+G+Ck+G++CkF+H++
  Gh_A08G1987 365 PGEPLCDFYSRYGICKFGSSCKFNHPM 391
                  589**********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.5876088IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-56087IPR000571Zinc finger, CCCH-type
PfamPF006425.7E-86287IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-56588IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.7E-46686IPR000571Zinc finger, CCCH-type
SMARTSM003560.34118141IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.681121142IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-7121141IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.0E-4122142IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-6160188IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.338160188IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-5160187IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-9163187IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-4166186IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.596318346IPR000571Zinc finger, CCCH-type
SMARTSM003567.8E-6318345IPR000571Zinc finger, CCCH-type
PfamPF006429.9E-9320345IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.28E-5322347IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-4324346IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.906364392IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-7364391IPR000571Zinc finger, CCCH-type
PfamPF006429.9E-11366391IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.1E-5367391IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-4369389IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
MAAEWKSLFD AGISMSRIAS AVAVAVTEGT SLSPSLNQDV MWQMNLRSSE TMESGYYPER  60
PGEPDCSYYI RTGLCRFGAT CRFNHPPNRK LAIAAARMKG EFPERVGQPE CQACTYSLFS  120
HYYLKTGTCK FGATCKFHHP REQAGIAGRV SLNILGYPFR PNETECAYYL RTGQCKFGST  180
CKFHHPQPTN MMISLRGSPI YPTVASPTTP GQQSYPGGIT NWSRASFIPS PRWQGPSSYA  240
PLILPQGMVS VPGWNAYSAS VSSSENLQQT NGNNQIYGTS NQNESVTGGS QASFSQFRSG  300
SVPIGFYALP RENVFPERPG QPECQFYMKT GDCKFGAVCR FHHPRERVPP APDCLLSPIG  360
LPLRPGEPLC DFYSRYGICK FGSSCKFNHP MGIFTYNYSI SSPSGAPVHH FLGSSSGTSG  420
LNLSSEGLVE SGSTKPRRIS LSENRQLSSS DENIDAEG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016714910.10.0PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X1
SwissprotQ9SWF90.0ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLA0A1U8LK670.0A0A1U8LK67_GOSHI; zinc finger CCCH domain-containing protein ZFN-like isoform X1
STRINGGorai.004G261700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33892864
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.10.0zinc finger protein 1