PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A08G2008
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family AP2
Protein Properties Length: 672aa    MW: 73238.9 Da    PI: 6.4728
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A08G2008genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.23e-11263319155
          AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  s y+GV++++++gr++A+++d  +     ++ k  + g ++ +e+Aa+a++ a++k++g
  Gh_A08G2008 263 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQSrKGRQ-GGYDKEEKAARAYDLAALKYWG 319
                  57*******************5444.2455536655.779999**************98 PP
2AP245.91.4e-14364413355
          AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Gh_A08G2008 364 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 413
                  9***************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.2E-8263319IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-15263329IPR016177DNA-binding domain
CDDcd000181.86E-19263329No hitNo description
SMARTSM003807.1E-23264333IPR001471AP2/ERF domain
PROSITE profilePS5103217.411264327IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.2E-12264328IPR001471AP2/ERF domain
PRINTSPR003673.5E-6265276IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-17362423IPR016177DNA-binding domain
CDDcd000183.56E-24362423No hitNo description
PROSITE profilePS5103219.203363421IPR001471AP2/ERF domain
SMARTSM003807.1E-33363427IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.2E-18363422IPR001471AP2/ERF domain
PfamPF008471.9E-9364413IPR001471AP2/ERF domain
PRINTSPR003673.5E-6403423IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 672 aa     Download sequence    Send to blast
MASMNNWLAF SLSPQEPVDH HHQSQTTVSR LGFNSDGISG TDVSGECFDL SGDSSVPSLN  60
LPPPFGILEA FNRNSNQPQD WNMKGSELSM VMGGSSCNTQ EPKLENFLGN HGCHTMYDTT  120
TGQYPLYTTT TARTTNGGGD EDNSTNNNTN LTHGASNSNT NSGNSIGLSM IKTWLRNQPA  180
PPPTQVETKN NGGGGSGGGG APQSLSLSMS TGGGGGGSGG ESSSSDNKKT PPQPPSTGVE  240
ITQTGTNEAV ARKSIDTFGQ RTSIYRGVTR HRWTGRYEAH LWDNSCRREG QSRKGRQGGY  300
DKEEKAARAY DLAALKYWGT TTTTNFPISN YEKELEEMKH MTRQEYVASL RRKSSGFSRG  360
ASMYRGVTRH HQHGRWQARI GRVAGNKDLY LGTFSTQEEA AEAYDIAAIK FRGLNAVTNF  420
DMSRYDVKSI LESSQLPIGG AAKRLKDVEQ AEMAMDMVHR SDGDNINTHL PDGINTYGTS  480
GWPTIAYQQA QPFSMHYPYG QRIWCKQEQD SDPDHAFHDL HQLQLGSTHN FFQPSVLHNL  540
MAMESSSMEH SSGSNTNSVI YNNTVSDGAG YGGYAIPLGT VIPTDTNQNQ SNDFGDNSNN  600
EVKALGYENV YTSSDPYHSR SMYYLSQQSS SSTSQASPCN NWVPTAVPTI AQRSSNMAVC  660
HGTPTFTVWN DT
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00610ChIP-seqTransfer from AT5G17430Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016714955.10.0PREDICTED: AP2-like ethylene-responsive transcription factor BBM
TrEMBLA0A1U8LKA70.0A0A1U8LKA7_GOSHI; AP2-like ethylene-responsive transcription factor BBM
STRINGGorai.004G263900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM86552737
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17430.11e-144AP2 family protein