PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A08G2161
Common NameCBF7
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 239aa    MW: 26614.6 Da    PI: 4.7473
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A08G2161genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.24.2e-184494155
          AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 + y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a+++++g
  Gh_A08G2161 44 PVYRGVRMRA-WGKWVSEIREPRK---KNRIWLGTFSTPEMAARAHDVAALSIKG 94
                 68*****998.**********854...59**********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.6E-124494IPR001471AP2/ERF domain
SuperFamilySSF541713.4E-2145102IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.5E-3145103IPR001471AP2/ERF domain
PROSITE profilePS5103223.02445102IPR001471AP2/ERF domain
SMARTSM003802.9E-3445108IPR001471AP2/ERF domain
PRINTSPR003674.5E-104657IPR001471AP2/ERF domain
CDDcd000182.69E-3246103No hitNo description
PRINTSPR003674.5E-106884IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MADSPNSETE LITRSNKSYD GKQRSGTDPI PEKRRPRDSI SKHPVYRGVR MRAWGKWVSE  60
IREPRKKNRI WLGTFSTPEM AARAHDVAAL SIKGNSAILN FPEFAELLPR PVSNSPRDVQ  120
AAAAKAAAME FLSNNTNNNV DATTSFLSSS SSSSMNMDEV STPEELSQIV ELPSLGTSYE  180
SVESGTEFVC MDPVDGWLLN PSGMPWYYED NNGYFGDEIP MQMQENTITN GFSPLPWNH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-19411031073Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.214370.0boll
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP7801900.0KP780190.1 Gossypium hirsutum C-repeat binding factor 7 (CBF7) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001314285.11e-178ethylene-responsive transcription factor TINY-like
RefseqXP_017625787.11e-178PREDICTED: ethylene-responsive transcription factor TINY-like
SwissprotQ9LYD33e-60DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A141AX481e-176A0A141AX48_GOSHI; C-repeat binding factor 7
STRINGGorai.004G281600.11e-159(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.13e-58ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]