PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A08G2207
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 152aa    MW: 16748.4 Da    PI: 8.2072
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A08G2207genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.39.4e-191767155
          AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 s+ykGVr +k +g+Wv+eIr p++   r r++lg++++ae+Aaka + a  +l+g
  Gh_A08G2207 17 SKYKGVRKRK-WGKWVSEIRLPNS---RERIWLGSYDSAEKAAKAFDVALYCLRG 67
                 89*****999.**********933...5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.24E-201776IPR016177DNA-binding domain
PfamPF008472.6E-111767IPR001471AP2/ERF domain
CDDcd000186.09E-271775No hitNo description
PROSITE profilePS5103221.9971875IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.5E-291876IPR001471AP2/ERF domain
SMARTSM003803.2E-321881IPR001471AP2/ERF domain
PRINTSPR003671.8E-91930IPR001471AP2/ERF domain
PRINTSPR003671.8E-94157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MKPTSPVEHV SNSGSSSKYK GVRKRKWGKW VSEIRLPNSR ERIWLGSYDS AEKAAKAFDV  60
ALYCLRGPEA NFNFPKNPPE VVGGRSFSPS EIRAVAARLA NQVDDQDGAD NNNDNNDSSN  120
DNYARKEQCT SSTSGAVPLQ AEENHEMGGP RF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-1617751372Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11925KGVRKRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.165966e-31ovule
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1098763706e-31
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017625830.11e-98PREDICTED: ethylene-responsive transcription factor ERF017-like
SwissprotQ84QC22e-45ERF17_ARATH; Ethylene-responsive transcription factor ERF017
TrEMBLA0A2P5W7M54e-95A0A2P5W7M5_GOSBA; Uncharacterized protein
STRINGGorai.004G285900.12e-81(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16142890
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.13e-45ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Li SJ, et al.
    The Citrus transcription factor, CitERF13, regulates citric acid accumulation via a protein-protein interaction with the vacuolar proton pump, CitVHA-c4.
    Sci Rep, 2016. 6: p. 20151
    [PMID:26837571]
  3. Yin XR, et al.
    Involvement of an ethylene response factor in chlorophyll degradation during citrus fruit degreening.
    Plant J., 2016. 86(5): p. 403-12
    [PMID:27037684]