PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A08G2252

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

ARR-B

Protein Properties

Length: 661aa MW: 72175.6 Da PI: 5.5443

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A08G2252	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	89.7	2.6e-28	207	261	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++W+ +LH++Fv av+qLG ++A+Pk+il+lm+v+gLt+e+v+SHLQkYRl Gh_A08G2252 207 KPRVVWSVDLHRKFVAAVNQLGLGDQAVPKKILDLMNVEGLTRENVASHLQKYRL 261 79****************************************************8 PP
2	Response_reg	81.3	3.1e-27	24	132	1	109
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 vl vdD+p+ +++l+++l k +y +v+++ ++ al++l+e++ +Dl++ D++mp+mdG++ll+ e++lp+i+++ah++ +++ + + Ga Gh_A08G2252 24 VLAVDDDPICLKILANLLCKCQY-QVTTTNQAIIALKMLRENKnrYDLVISDVNMPDMDGFKLLELVGL-EMDLPVIMLSAHSDTKLVMKGITHGAC 118 799******************.***********888888***************87754.558******************** PP EEEESS--HHHHHH CS Response_reg 96 dflsKpfdpeelvk 109 d+l Kp+ +eel + Gh_A08G2252 119 DYLLKPVRIEELKN 132 *********987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF036392	7.2E-165	2	661	IPR017053	Response regulator B-type, plant
Gene3D	G3DSA:3.40.50.2300	2.4E-42	21	145	No hit	No description
SuperFamily	SSF52172	4.84E-35	21	144	IPR011006	CheY-like superfamily
SMART	SM00448	3.4E-31	22	134	IPR001789	Signal transduction response regulator, receiver domain
PROSITE profile	PS50110	42.762	23	138	IPR001789	Signal transduction response regulator, receiver domain
Pfam	PF00072	1.9E-24	24	132	IPR001789	Signal transduction response regulator, receiver domain
CDD	cd00156	1.57E-27	25	137	No hit	No description
Gene3D	G3DSA:3.40.50.2300	2.4E-42	179	191	No hit	No description
SuperFamily	SSF46689	1.61E-18	204	265	IPR009057	Homeodomain-like
PROSITE profile	PS51294	10.685	204	264	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	4.0E-30	205	266	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	7.6E-25	207	261	IPR006447	Myb domain, plants
Pfam	PF00249	3.6E-7	209	260	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000160	Biological Process	phosphorelay signal transduction system
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 661 aa Download sequence Send to blast
MEEKMGGSNG EDSGEDQFPV GMRVLAVDDD PICLKILANL LCKCQYQVTT TNQAIIALKM 60 LRENKNRYDL VISDVNMPDM DGFKLLELVG LEMDLPVIML SAHSDTKLVM KGITHGACDY 120 LLKPVRIEEL KNIWQHVVRR KKPDSKDELA APNHDKSRGG TGEAGQTWVA CSSDQKVNKK 180 RKDQSEDEEE ETEDNGRENE DSSCQKKPRV VWSVDLHRKF VAAVNQLGLG DQAVPKKILD 240 LMNVEGLTRE NVASHLQKYR LYLRRLSSVA TQQANMVVAL GSRGPSHLRT GSLDGFGDFR 300 SFTGPGRFSS ASLPSYQSRG TFGRLNSSAA LTLSGISSGV IQPGNSVNGL RKIQPVVFPA 360 NQNQNGVLFQ GITASIELNQ LSQTKSTNHF GKYNCVDERN VFRISSSFPD ARVVVGSSSN 420 SLSTASGNAL VLQGNTQQVQ CSAAFENLPS FGMTSLNRES NDLSVRGSSN CLEHGRCSEN 480 WQGTVQLSNF PPSNEQLPSN NLQESIPWRN SSPSNGCIAL SSMASSAFLG DSRADVLCKA 540 GLNNSYSHVD SRVSASGSMM DQSNAVSSNT NDVSLFSHLN GEAPFAVWLS EGDKSSFDTD 600 LRSNDNFLFL QSKPQNGFSQ NNFESLEDIM SPVFKLEQNN ETAFMDGGFG FDVAYPLGSC 660 M

Sequence ? help Back to Top

Protein Sequence Length: 661 aa Download sequence Send to blast

MEEKMGGSNG EDSGEDQFPV GMRVLAVDDD PICLKILANL LCKCQYQVTT TNQAIIALKM  60
LRENKNRYDL VISDVNMPDM DGFKLLELVG LEMDLPVIML SAHSDTKLVM KGITHGACDY  120
LLKPVRIEEL KNIWQHVVRR KKPDSKDELA APNHDKSRGG TGEAGQTWVA CSSDQKVNKK  180
RKDQSEDEEE ETEDNGRENE DSSCQKKPRV VWSVDLHRKF VAAVNQLGLG DQAVPKKILD  240
LMNVEGLTRE NVASHLQKYR LYLRRLSSVA TQQANMVVAL GSRGPSHLRT GSLDGFGDFR  300
SFTGPGRFSS ASLPSYQSRG TFGRLNSSAA LTLSGISSGV IQPGNSVNGL RKIQPVVFPA  360
NQNQNGVLFQ GITASIELNQ LSQTKSTNHF GKYNCVDERN VFRISSSFPD ARVVVGSSSN  420
SLSTASGNAL VLQGNTQQVQ CSAAFENLPS FGMTSLNRES NDLSVRGSSN CLEHGRCSEN  480
WQGTVQLSNF PPSNEQLPSN NLQESIPWRN SSPSNGCIAL SSMASSAFLG DSRADVLCKA  540
GLNNSYSHVD SRVSASGSMM DQSNAVSSNT NDVSLFSHLN GEAPFAVWLS EGDKSSFDTD  600
LRSNDNFLFL QSKPQNGFSQ NNFESLEDIM SPVFKLEQNN ETAFMDGGFG FDVAYPLGSC  660
M

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1irz_A	1e-22	203	267	1	64	ARR10-B
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250\|UniProtKB:Q940D0}.
UniProt	Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250\|UniProtKB:Q940D0}.
UniProt	Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250\|UniProtKB:Q940D0}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016738829.1	0.0	PREDICTED: two-component response regulator ARR12-like
Swissprot	A2X1N2	1e-128	ORR24_ORYSI; Two-component response regulator ORR24
Swissprot	B8AEH1	1e-128	ORR23_ORYSI; Two-component response regulator ORR23
Swissprot	Q6H805	1e-128	ORR24_ORYSJ; Two-component response regulator ORR24
TrEMBL	A0A1U8NLN5	0.0	A0A1U8NLN5_GOSHI; Two-component response regulator
STRING	Gorai.004G291100.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1981	28	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G25180.1	1e-119	response regulator 12

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]