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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Gh_A08G2491 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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| Family |
GRAS |
| Protein Properties |
Length: 437aa MW: 50097.4 Da PI: 7.03 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Gh_A08G2491 | genome | NAU-NBI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 410.9 | 1.2e-125 | 41 | 437 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetsekn..sseelaal.............. 81
+++lL++cAe vs++d+ +a +lL+ ls +sp+gd+++Rl++ f++AL+ r++r + ++ + l+ s+ ++
Gh_A08G2491 41 MRQLLISCAELVSQSDFPAAIRLLSILSSSSSPSGDSIERLVHQFVKALSLRINRlHHHHHHHGLAGSSLMRMMndINF----Pitstagpvnfdidp 134
589****************************************************544445555544333322223333....233458888888888 PP
GRAS 82 ......klfsevsPilkfshltaNqaIleave.geervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakf 168
+++++P+++f+hltaNqaIlea++ g++++HiiDfdi++G+QWp+L+qaLa+R+ ++pp+lRiTg g+ + + l++tg+rL kf
Gh_A08G2491 135 slqscyLSLNQITPFIRFAHLTANQAILEAIQvGQQCIHIIDFDIMHGVQWPPLMQALAERSanthHPPPKLRITGTGH----DLNILHRTGDRLFKF 228
88765344***********************94669**************************88877899*********....9************** PP
GRAS 169 Aeelgvpfefnvl...vak.rledlel.eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleal 261
A++lg++fef++l ++ ++ + ++ ++ + p+EalaVn++l lhrll+++ +++L+ +k l+P+vv+v+e+ea+hn++ Fl+rf+eal
Gh_A08G2491 229 AQSLGLRFEFHPLlvlNEDpTWIATNFtSMVTILPDEALAVNCMLYLHRLLKDDSRDI---RHFLHHIKALNPTVVTVAEREANHNHPLFLQRFVEAL 323
************96532223454555415668889****************6665555...59*********************************** PP
GRAS 262 eyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgsl 358
+yy+a+fdslea+lp++s+er vE+ ++greiv++va+eg++rrerhe+le+W+ l+++GF +vpls +a +qaklllr ++ s+gy+++ ++++
Gh_A08G2491 324 DYYTAIFDSLEATLPPNSRERLAVEQIWFGREIVDIVAAEGENRRERHERLETWEVILRSSGFINVPLSPFAHSQAKLLLRLHYpSEGYQLQIVNNCF 421
************************************************************************************************** PP
GRAS 359 vlgWkdrpLvsvSaWr 374
+lgW++rpL+svS+Wr
Gh_A08G2491 422 FLGWQNRPLFSVSSWR 437
***************8 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 437 aa
Download sequence Send
to blast |
MLSLLISPFI DQEEEEGLFL FVASDLHSQH RQQRRQPPLK MRQLLISCAE LVSQSDFPAA 60
IRLLSILSSS SSPSGDSIER LVHQFVKALS LRINRLHHHH HHHGLAGSSL MRMMNDINFP 120
ITSTAGPVNF DIDPSLQSCY LSLNQITPFI RFAHLTANQA ILEAIQVGQQ CIHIIDFDIM 180
HGVQWPPLMQ ALAERSANTH HPPPKLRITG TGHDLNILHR TGDRLFKFAQ SLGLRFEFHP 240
LLVLNEDPTW IATNFTSMVT ILPDEALAVN CMLYLHRLLK DDSRDIRHFL HHIKALNPTV 300
VTVAEREANH NHPLFLQRFV EALDYYTAIF DSLEATLPPN SRERLAVEQI WFGREIVDIV 360
AAEGENRRER HERLETWEVI LRSSGFINVP LSPFAHSQAK LLLRLHYPSE GYQLQIVNNC 420
FFLGWQNRPL FSVSSWR
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Expressed in the axils of leaf primordia and leaves from P1 to P20/22. In the axil of P1, expressed in 3 to 5 cell layers including the L1 to L3 layers of the shoot apical meristem (SAM). Then, extends from 1 or 2 cell layers in the adaxial-abaxial dimension. From P5 to P22, expression is restricted to a 1 to 2 cell-layer domain located within primordium. In the axils of older leaf primordia, expression decreases until it is no longer detectable in the axils of primordia older than P20/P22. {ECO:0000269|PubMed:12730136}. |
| Uniprot | TISSUE SPECIFICITY: Expressed in roots and flowers. {ECO:0000269|PubMed:18500650}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor required for axillary (lateral) shoot meristem formation during vegetative development. Seems to act upstream of REVOLUTA. {ECO:0000269|PubMed:12730136}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | KP236114 | 0.0 | KP236114.1 Gossypium hirsutum LAS-like transcription factor (LAS) mRNA, complete cds. |
