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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Gh_A09G0190 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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| Family | bHLH | ||||||||
| Protein Properties | Length: 93aa MW: 10540.6 Da PI: 10.3158 | ||||||||
| Description | bHLH family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | HLH | 15.7 | 2.8e-05 | 28 | 57 | 22 | 54 |
HHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
HLH 22 eLrellPkaskapskKlsKaeiLekAveYIksL 54
+Lrell ++ ++kK + a L +++++Ik+L
Gh_A09G0190 28 RLRELLSNN---KKKKRNAAKLLDETCNHIKKL 57
79*******...*******************99 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF47459 | 2.62E-6 | 27 | 74 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene3D | G3DSA:4.10.280.10 | 1.6E-5 | 28 | 76 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 93 aa Download sequence Send to blast |
MSSKRSSGRS NERSSGSRSN ESEDFSLRLR ELLSNNKKKK RNAAKLLDET CNHIKKLNGE 60 VDDLSNRISE LLNSSDTESS NINANILRQF LQQ |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_016670185.1 | 8e-47 | PREDICTED: transcription factor PRE3-like | ||||
| TrEMBL | A0A2P5Y2S9 | 2e-55 | A0A2P5Y2S9_GOSBA; Uncharacterized protein | ||||
| STRING | Gorai.006G021500.1 | 8e-44 | (Gossypium raimondii) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Malvids | OGEM25061 | 3 | 4 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G26945.1 | 6e-09 | bHLH family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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