PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A09G0319

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

MYB

Protein Properties

Length: 243aa MW: 27743.9 Da PI: 5.0631

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A09G0319	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	43.9	5.5e-14	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd +l + + G ++W+t+++ g+ R++k+c++rw +yl Gh_A09G0319 14 RGPWTIEEDHKLMNFILNNGIHCWRTVPKLAGLLRCGKSCRLRWINYL 61 89****************************99**********97 PP
2	Myb_DNA-binding	58.5	1.5e-18	67	110	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++T+ E++++++++++lG++ W++Ia++++ gRt++++k++w++ Gh_A09G0319 67 RGAFTESEEDQIIELHARLGNR-WSKIASHFP-GRTDNEIKNHWNT 110 89******************.*****.*********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.9E-21	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	13.486	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	6.36E-29	11	108	IPR009057	Homeodomain-like
SMART	SM00717	2.4E-6	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	6.3E-12	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	9.51E-5	16	61	No hit	No description
PROSITE profile	PS51294	27.722	62	116	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	7.5E-27	65	117	IPR009057	Homeodomain-like
SMART	SM00717	1.5E-17	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	3.0E-17	67	110	IPR001005	SANT/Myb domain
CDD	cd00167	3.15E-12	69	110	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence Send to blast
MGRQPCCDKV GLKRGPWTIE EDHKLMNFIL NNGIHCWRTV PKLAGLLRCG KSCRLRWINY 60 LRPDLKRGAF TESEEDQIIE LHARLGNRWS KIASHFPGRT DNEIKNHWNT RIKKKLKLLG 120 LDPVTHKPIQ KAEENDGDSS NKSNGDDQQQ GIKLDDDEKV EGIELSLDET NDLFNSYQML 180 CESFDLDSWL NQDAANNTCS SSYSMEESSN KSSTGETNST IGEDSLKQWV DSVDSFLSWD 240 SFI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	2e-28	12	116	5	108	B-MYB
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, stems, leaves, seed pods and flowers. Strongest expression in the stem. {ECO:0000269\|PubMed:1840903}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016668410.1	0.0	PREDICTED: myb-related protein 315-like
Swissprot	P81394	3e-83	MYB15_ANTMA; Myb-related protein 315
TrEMBL	A0A1U8HQU7	1e-179	A0A1U8HQU7_GOSHI; myb-related protein 315-like
TrEMBL	A0A2P5YL03	1e-179	A0A2P5YL03_GOSBA; Uncharacterized protein
STRING	Gorai.006G037500.1	1e-160	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4	28	2646

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G14340.1	3e-85	myb domain protein 40

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]