PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A09G0469

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

LBD

Protein Properties

Length: 240aa MW: 25734.6 Da PI: 8.6122

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A09G0469	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	84.3	1.8e-26	4	108	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeered.amsslvyeAearardPvyGavgvilklqqqleqlka 92 +C++C+vlr++C+++C+++p++ +++q++++ +++k++G++ +++l+ a p++ r++ +++sl+yeA+ r+ dPv+G+vg++ +++++l+++++ Gh_A09G0469 4 SCNGCRVLRKGCTESCTIRPCLqwipsAQSQANATLFLAKFYGRAGLINLICAGPQNLRPAgVFKSLLYEACGRIVDPVHGSVGLMCSGNWHLCEAAV 101 6*******************9996555778*********************9865389*******************************9 PP DUF260 93 elallke 99 +++l ++ Gh_A09G0469 102 DAVLNGA 108 9988765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	14.745	3	110	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.3E-21	4	103	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence Send to blast
MRMSCNGCRV LRKGCTESCT IRPCLQWIPS AQSQANATLF LAKFYGRAGL INLICAGPQN 60 LRPAGVFKSL LYEACGRIVD PVHGSVGLMC SGNWHLCEAA VDAVLNGAPI KQVPSELSAT 120 KCPPLKSSFD IRHVSKDKKS NDGLRKVKSR GRFKRSASKP KPKLEEVVFE PVSKGGDSWE 180 GDCLSVETVE GSLAKGDELG DGSDLELELT LGLEPRTKNR GNNINGRGDA TCGGRVEGLC

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017610064.1	1e-175	PREDICTED: LOB domain-containing protein 40-like isoform X1
Swissprot	Q9CA30	1e-65	LBD42_ARATH; LOB domain-containing protein 42
TrEMBL	A0A0B0MZS2	1e-162	A0A0B0MZS2_GOSAR; LOB domain-containing 42-like protein
STRING	Gorai.006G061200.1	1e-153	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM18027	8	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68510.1	7e-68	LOB domain-containing protein 42