PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A09G0695
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 548aa    MW: 62954.3 Da    PI: 6.8232
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A09G0695genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.16.9e-18326422296
                  EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
           B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                  +k+l++sdv+++gr+vlpk+ ae +   ++ +e+++++++d  s+  W++k+++  ++ks++yvl+ ++ +Fvk+ngL +gD+++++  ++++++l++
  Gh_A09G0695 326 KKELKNSDVGSLGRIVLPKRDAEVNlpPLSDKEGIQVMIKDvYSNHMWTLKYKFwsNNKSRMYVLE-NTGDFVKQNGLGTGDSLTLY--EDESKNLYF 420
                  6899******************999**555568899*****77889******99888888889999.********************..568888888 PP

                  EE CS
           B3  95 kv 96 
                  ++
  Gh_A09G0695 421 SI 422
                  77 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.1E-23321424IPR015300DNA-binding pseudobarrel domain
CDDcd100171.45E-20324424No hitNo description
SMARTSM010194.8E-21325426IPR003340B3 DNA binding domain
SuperFamilySSF1019364.58E-20325422IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.221325426IPR003340B3 DNA binding domain
PfamPF023623.7E-15327423IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 548 aa     Download sequence    Send to blast
MHGVLCRISP RLGPHLNQRW RQHYLKHTHW SDGYPETTFL RPLVSQPTTP LAISRYFTLV  60
VSLLSFYLQF HGLFLSPQPI PLHHLTRFSC FFHTWTHPNG SILHPHDLIE PHFVLTQNRK  120
EEHTESSALS STFFSDRNQP CNPLDSSSSH CTFVLMENSY IPFFSTTATS STTPITTTTT  180
THSPSNMDWS QNSDFSMFEP MNSQFQHPSQ LLSPNQSLQF PYNHSIEQAP VYPFFTGQKG  240
FEFGVCKEQE RRTNDPYRTR LARINRKLAR QRSLQRNANS GASTQVDARR LINSGADTDT  300
NKNKDTKKDL YRFCTPDNKR LRVLLKKELK NSDVGSLGRI VLPKRDAEVN LPPLSDKEGI  360
QVMIKDVYSN HMWTLKYKFW SNNKSRMYVL ENTGDFVKQN GLGTGDSLTL YEDESKNLYF  420
SITKVATVAV ESSSNIQYYH NVNNNGEEGN DNSNNMYLPF TSQSKDDEAA SLELFMEQQE  480
PNDFIMTLPM DSTYGSHTMF PEETRHLPNN VDQMPSLSRS VDDISINFDD CYGGLDMLPE  540
ANQYNFSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9c_A1e-513154223110B3 domain-containing transcription factor LEC2
6j9c_D1e-513154223110B3 domain-containing transcription factor LEC2
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5841651e-172JX584165.1 Gossypium hirsutum clone NBRI_GE17392 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016668784.10.0PREDICTED: B3 domain-containing transcription factor LEC2-like
RefseqXP_016668785.10.0PREDICTED: B3 domain-containing transcription factor LEC2-like
RefseqXP_016668786.10.0PREDICTED: B3 domain-containing transcription factor LEC2-like
TrEMBLA0A1U8HZH00.0A0A1U8HZH0_GOSHI; B3 domain-containing transcription factor LEC2-like
STRINGGorai.006G087600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM92622336
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28300.18e-48B3 family protein