PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A09G0699
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 257aa    MW: 28009.2 Da    PI: 9.4731
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A09G0699genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.87.3e-202675255
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 +++GVr ++ +gr++AeIrdp   gk+ r++lg+f+taeeAa a++aa++k++g
  Gh_A09G0699 26 HFRGVRKRP-WGRYAAEIRDP---GKKSRVWLGTFDTAEEAATAYDAAARKFRG 75
                 69*******.**********8...557*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.8E-322683IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-222684IPR016177DNA-binding domain
CDDcd000182.05E-192683No hitNo description
PROSITE profilePS5103223.5252683IPR001471AP2/ERF domain
PfamPF008474.2E-132675IPR001471AP2/ERF domain
SMARTSM003802.0E-382689IPR001471AP2/ERF domain
PRINTSPR003671.6E-102738IPR001471AP2/ERF domain
PRINTSPR003671.6E-104965IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MAPREKSTAA VKGDGNSGGG ISKEVHFRGV RKRPWGRYAA EIRDPGKKSR VWLGTFDTAE  60
EAATAYDAAA RKFRGSKAKT NFPLPCENIN NGVNVINCDN NINNNGKINI NINNNQSSSQ  120
SSTVESSSLE PTTIMIDSSP LDLNLGRRSI TGFGSSTVRF PFHQVSTGTG VFHAAGMPTI  180
ASPQVFYFDA FVRSGGMLKG QQYQRMTFDH HDFHRVFNGG VQSDSDSSSV VDLNHHEIKP  240
RPLLNIDLNQ PALPEIA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-242684261ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.248420.0ovule
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016668788.10.0PREDICTED: ethylene-responsive transcription factor 4-like
TrEMBLA0A1U8HXW50.0A0A1U8HXW5_GOSHI; ethylene-responsive transcription factor 4-like
STRINGGorai.006G088000.11e-123(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2501134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.13e-29erf domain protein 9