PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A09G0703

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NAC

Protein Properties

Length: 315aa MW: 36137.7 Da PI: 6.3434

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A09G0703	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	167.6	4.1e-52	11	139	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 lppGfrFhPtdeel+ +yL++k+++++++l ++i++v+iyk++Pw+Lp k+ +e+ew+fFs+rd+ky++g+r+nrat gyWkatg+dk+++++ ++ Gh_A09G0703 11 LPPGFRFHPTDEELIIYYLTQKLSSSSNPLINIIADVNIYKFDPWELPGKALFGENEWFFFSPRDRKYPNGTRPNRATGCGYWKATGTDKPIITSvGS 108 79**************************999***********8777899*********************************999788 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 + g+kktLvfykgr pk+++tdWvm eyrl Gh_A09G0703 109 QCLGMKKTLVFYKGRPPKASRTDWVMTEYRL 139 88*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.62E-61	5	166	IPR003441	NAC domain
PROSITE profile	PS51005	58.882	11	166	IPR003441	NAC domain
Pfam	PF02365	7.6E-27	12	139	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 315 aa Download sequence Send to blast
MYGMSSGSDI LPPGFRFHPT DEELIIYYLT QKLSSSSNPL INIIADVNIY KFDPWELPGK 60 ALFGENEWFF FSPRDRKYPN GTRPNRATGC GYWKATGTDK PIITSVGSQC LGMKKTLVFY 120 KGRPPKASRT DWVMTEYRLL YDHFLPQKPK GSMRLDDWVL CRVHHKSKVP QQITSGKNYD 180 RSLSCSPPFQ RGCLQGQEMI LNNYTIQQGN EYHQFPYHNY HMTIPLENEQ LDNQMECDGT 240 TTVDFNVGDM LEYIDHRVFH EGDITFGQEL PLVSEKRLNA SVSMHDDGNA YVPQICSQAP 300 SSSSSSSYQE VFLEF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-64	11	172	17	171	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-64	11	172	17	171	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-64	11	172	17	171	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-64	11	172	17	171	NO APICAL MERISTEM PROTEIN
4dul_A	3e-64	11	172	17	171	NAC domain-containing protein 19
4dul_B	3e-64	11	172	17	171	NAC domain-containing protein 19
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, stem, flowers, and leaves. {ECO:0000269\|PubMed:29760199}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence (developmental, light-induced and ABA-induced senescence) and regulates fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. Activates the expression of senescence and ABA associated genes including NCED1, ABCG40, CYP707A2, SAG113, SGR1 and PAO, by directly binding to their promoters. {ECO:0000269\|PubMed:29760199}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. Induced by abscisic acid (ABA). {ECO:0000269\|PubMed:29760199}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC847242	0.0	KC847242.1 Gossypium hirsutum NAC domain protein NAC65 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016670227.1	0.0	PREDICTED: NAC transcription factor 56-like
Swissprot	K4BNG7	1e-70	NAP2_SOLLC; NAC domain-containing protein 2
TrEMBL	A0A1U8HW31	0.0	A0A1U8HW31_GOSHI; NAC transcription factor 56-like
STRING	Gorai.006G088400.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM25010	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69490.1	1e-69	NAC-like, activated by AP3/PI

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Ma X, et al. The NAC Transcription Factor SlNAP2 Regulates Leaf Senescence and Fruit Yield in Tomato. Plant Physiol., 2018. 177(3): p. 1286-1302 [PMID:29760199]