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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Gh_A09G0835 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
| Family |
C2H2 |
| Protein Properties |
Length: 376aa MW: 41968.4 Da PI: 8.1032 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Gh_A09G0835 | genome | NAU-NBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 22.4 | 3.1e-07 | 220 | 242 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
+ C+ Cgk F+r nL+ H+r H
Gh_A09G0835 220 HYCQVCGKGFKRDANLRMHMRAH 242
68*******************99 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 376 aa
Download sequence Send
to blast |
MISDTIPSSF PNASQALPMY PMTDHQNHIN VPYSCLEAPG SGSDQAPSTS LLYNLSILED 60
KVNQLQSLVS ILISPDQIHP ESTRSLAIAN MESLVQEIIG AASSMVLVSQ HMSLGTTSGN 120
NNAISKQPNF TDDFAGGNLV QERGQGSYPS TDQTFSWYDR NSIHNNQSLQ VGNADKLKER 180
KELGEMVQRS EISEGSQGDA STNCDIVELD AEDLLAKYTH YCQVCGKGFK RDANLRMHMR 240
AHGDEYKTNA ALVNPMKSQE GSNNGMGNCS MKFPKRYSCP YEGCRWNQKH AKFQPLKSMI 300
CVKNHYKRSH CPKMYVCKRC NRKQFSVLSD LRTHEKHCGD LRWQCSCGNT FSRKDKLMGH 360
VALFVGHRPV VAHSLH
|
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed at low levels in roots (e.g. root tips and lateral roots), leaves (e.g. at the edge of mature leaves, possibly in hydathodes, and in vascular bundles), flowers (e.g. floral filaments), stems, siliques and cotyledons. {ECO:0000269|PubMed:23935008}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor. Together with STOP1, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:23935008}. |
