PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A09G0913
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 228aa    MW: 25840 Da    PI: 6.5195
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A09G0913genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM137.96.3e-4341352128
          NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdi.ykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                  + GfrF Pt+eelv++yL+++++g++ +++ vi+ ++i y++ePwdLpk     +k++ ++w++F++r++++a+g r++r+t+sgyWkatg++  v+s
  Gh_A09G0913   4 AIGFRFFPTEEELVSFYLRNQLQGTRQDMHLVIPVLNIfYDLEPWDLPKlageLCKGDVEQWFYFIPRQEREARGGRASRTTASGYWKATGSSGFVYS 101
                  57***************************889****873678******656765566888************************************** PP

          NAM  95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128
                  ++++l+g+kkt+vfykg+ap+g+kt+W m+eyr+
  Gh_A09G0913 102 SDDRLIGMKKTMVFYKGKAPNGRKTKWKMNEYRA 135
                  ********************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100544.5873162IPR003441NAC domain
SuperFamilySSF1019415.89E-453161IPR003441NAC domain
PfamPF023653.0E-225134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MAVAIGFRFF PTEEELVSFY LRNQLQGTRQ DMHLVIPVLN IFYDLEPWDL PKLAGELCKG  60
DVEQWFYFIP RQEREARGGR ASRTTASGYW KATGSSGFVY SSDDRLIGMK KTMVFYKGKA  120
PNGRKTKWKM NEYRAIEALS DPYVAAPPKL RHDFSLCRVY VASSSSRAFD RRPLEAHNNA  180
ATTSGGASGT SHAGGDHYNP AEASEDEFWE LINNLEEHAI GWEQLNEI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A9e-31116715170NO APICAL MERISTEM PROTEIN
1ut4_B9e-31116715170NO APICAL MERISTEM PROTEIN
1ut7_A9e-31116715170NO APICAL MERISTEM PROTEIN
1ut7_B9e-31116715170NO APICAL MERISTEM PROTEIN
4dul_A9e-31116715170NAC domain-containing protein 19
4dul_B9e-31116715170NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.38010.0ovule
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ1300420.0KJ130042.1 Gossypium barbadense NAC protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016669029.11e-172PREDICTED: NAC domain-containing protein 90-like
SwissprotQ9FMR38e-85NAC90_ARATH; NAC domain-containing protein 90
TrEMBLA0A1U8I0611e-171A0A1U8I061_GOSHI; NAC domain-containing protein 90-like
STRINGGorai.006G113000.11e-165(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14452893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.12e-84NAC domain containing protein 90
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]