PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A09G1063

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

M-type_MADS

Protein Properties

Length: 217aa MW: 24600.2 Da PI: 8.9573

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A09G1063	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	68.1	8.4e-22	16	64	1	49
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k+i k n qvtfskRr+ ++KKA+EL++LC++++a+i+fs+ gk++ + Gh_A09G1063 16 KKIAKKNNLQVTFSKRRAELFKKASELCTLCGVDIAIIVFSPAGKVFSF 64 678999****************************************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	22.792	8	68	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.9E-29	8	67	IPR002100	Transcription factor, MADS-box
CDD	cd00265	5.42E-33	9	83	No hit	No description
SuperFamily	SSF55455	9.42E-26	9	90	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.8E-17	10	30	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.3E-24	17	64	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.8E-17	30	45	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.8E-17	45	66	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 217 aa Download sequence Send to blast
MVQKNAIQGR QKITMKKIAK KNNLQVTFSK RRAELFKKAS ELCTLCGVDI AIIVFSPAGK 60 VFSFGHPNVE SAVHRFLTRN TSSMHYDIVE AHPNANIREL NAQIAHLLEM LEGEKRKGQA 120 LDEEREAGRR QCWWQAPIHE LGLSELQQLR NAMEELKRNV GKQANLMQAA VECSNDWPFL 180 KPNGVGISNF GTQENEMNAS SSITQMHKFG PDLYFDF

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed in the final stages of embryo sac development. {ECO:0000269\|PubMed:18713950}.
Uniprot	TISSUE SPECIFICITY: Expressed exclusively in the central cell of the female gametophyte and in early endosperm. {ECO:0000269\|PubMed:18599653, ECO:0000269\|PubMed:18713950}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. Controls central cell differentiation during female gametophyte development. {ECO:0000269\|PubMed:18599653, ECO:0000269\|PubMed:18713950}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016670086.1	1e-163	PREDICTED: agamous-like MADS-box protein AGL61
Swissprot	Q4PSU4	2e-49	AGL61_ARATH; Agamous-like MADS-box protein AGL61
TrEMBL	A0A1U8HVP0	1e-161	A0A1U8HVP0_GOSHI; agamous-like MADS-box protein AGL61
STRING	Gorai.006G127800.1	1e-151	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM86	28	390

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24840.1	9e-52	AGAMOUS-like 61

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]