PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A09G1149

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NAC

Protein Properties

Length: 208aa MW: 23666.6 Da PI: 6.1364

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A09G1149	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	84.5	2.1e-26	16	143	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvk.aeekewyfFskrdkkya.tgkrknratksgyWkatgkdkevlsk. 95 lp+G + P+de l + L k+ +g++++ ++++vd+y+ +P +L ++++ +++++wy F++r kk+ t+ r+ r t +gyW +tg dk++ ++ Gh_A09G1149 16 LPRGNQVFPSDEFLA-DCLMKRFNGEPNPD--HFHDVDLYSKHPAQLTEELEpSTDNKWYIFTPRFKKTLgTKLRPDRRTPNGYWCTTGVDKAISVEg 110 6889999998887.77888999999666..79*********9544415778****998764789*****************985 PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ lk+ L fy+g++p+++kt+W mheyrl Gh_A09G1149 111 STNPAALKNFLDFYEGNRPDSTKTEWKMHEYRL 143 66679************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.35E-33	12	173	IPR003441	NAC domain
PROSITE profile	PS51005	35.332	16	173	IPR003441	NAC domain
Pfam	PF02365	1.1E-11	19	143	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 208 aa Download sequence Send to blast
MESSGAAVVG NDEIQLPRGN QVFPSDEFLA DCLMKRFNGE PNPDHFHDVD LYSKHPAQLT 60 EELEPSTDNK WYIFTPRFKK TLGTKLRPDR RTPNGYWCTT GVDKAISVEG STNPAALKNF 120 LDFYEGNRPD STKTEWKMHE YRLSDAVKNT LINSKPRGDM TLDNWVLCKL YKKREMSSRS 180 EASTPTIIEA QNNEDKSSPP AANMIIFL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	7e-24	13	179	14	171	NO APICAL MERISTEM PROTEIN
1ut4_B	7e-24	13	179	14	171	NO APICAL MERISTEM PROTEIN
1ut7_A	7e-24	13	179	14	171	NO APICAL MERISTEM PROTEIN
1ut7_B	7e-24	13	179	14	171	NO APICAL MERISTEM PROTEIN
3swm_A	8e-24	13	179	17	174	NAC domain-containing protein 19
3swm_B	8e-24	13	179	17	174	NAC domain-containing protein 19
3swm_C	8e-24	13	179	17	174	NAC domain-containing protein 19
3swm_D	8e-24	13	179	17	174	NAC domain-containing protein 19
3swp_A	8e-24	13	179	17	174	NAC domain-containing protein 19
3swp_B	8e-24	13	179	17	174	NAC domain-containing protein 19
3swp_C	8e-24	13	179	17	174	NAC domain-containing protein 19
3swp_D	8e-24	13	179	17	174	NAC domain-containing protein 19
4dul_A	7e-24	13	179	14	171	NAC domain-containing protein 19
4dul_B	7e-24	13	179	14	171	NAC domain-containing protein 19

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016670271.1	1e-153	PREDICTED: NAC transcription factor 29-like isoform X1
TrEMBL	A0A2P5WJT4	1e-152	A0A2P5WJT4_GOSBA; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM35523	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04070.2	5e-32	NAC domain containing protein 47