PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A09G1191

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

G2-like

Protein Properties

Length: 315aa MW: 36353.8 Da PI: 8.0549

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A09G1191	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	97.9	7.3e-31	146	200	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+ Wt++LHe+Fve+v++LGG e+AtPktil+lm+ +gLt+ hvkSHLQkYR Gh_A09G1191 146 KARIMWTQDLHEKFVECVKRLGGCEQATPKTILKLMDTQGLTIFHVKSHLQKYRA 200 68****************************************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	6.8E-28	143	201	IPR009057	Homeodomain-like
PROSITE profile	PS51294	10.658	143	203	IPR017930	Myb domain
SuperFamily	SSF46689	3.76E-16	145	200	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.4E-22	146	200	IPR006447	Myb domain, plants
Pfam	PF00249	1.7E-8	151	199	IPR001005	SANT/Myb domain
Pfam	PF14379	2.3E-20	228	274	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 315 aa Download sequence Send to blast
MNTKRTDSQE LARQSLGFNR NCNLQPAMEG VPQQLNPGSS SSNPIMSGFQ TPAYAFYATE 60 RRIQLDTSFC PQHNIYSSIE SIAQDEPNYD FRNTLQSLVK SQICFDQYQK SFERSYKFPG 120 SNAKTHFSVP SRGNQDQRAY CNKSNKARIM WTQDLHEKFV ECVKRLGGCE QATPKTILKL 180 MDTQGLTIFH VKSHLQKYRA ARYMPEFTQE RRTSTTDLTQ IDVKTGLHLT EALQLQLDVQ 240 RRLNEQLEFQ RNLQLRIEEQ GRRLKMMIDE QQKTNENLLK NQGVDIKPYE HDPSFSDLDS 300 SIAETSENVL TSSPC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	3e-22	146	203	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	3e-22	146	203	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	3e-22	146	203	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	3e-22	146	203	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	3e-22	146	203	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	3e-22	146	203	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	3e-22	146	203	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	3e-22	146	203	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	3e-22	146	203	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	3e-22	146	203	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	3e-22	146	203	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	3e-22	146	203	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016670285.1	0.0	PREDICTED: uncharacterized protein LOC107890336
TrEMBL	A0A1U8HW97	0.0	A0A1U8HW97_GOSHI; uncharacterized protein LOC107890336
STRING	Gorai.006G142000.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM24434	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06800.1	2e-64	G2-like family protein