PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A09G1285

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

GRF

Protein Properties

Length: 405aa MW: 44214.1 Da PI: 8.2821

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A09G1285	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	81.4	8e-26	148	191	1	44
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCsr+v++g+k+CErH+hrgr+rsrk++e Gh_A09G1285 148 DPEPGRCRRTDGKKWRCSRDVVPGQKYCERHVHRGRNRSRKPVE 191 79***************************************997 PP
2	QLQ	51.3	3.5e-18	83	119	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 s+F+ aQ+q+L+ Q+l+y+y++a++ vPpeLl +i+k Gh_A09G1285 83 SYFSLAQWQELELQALIYRYMLAGAAVPPELLHPIKK 119 79*********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	2.8E-10	83	119	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	3.9E-13	84	117	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	20.134	84	119	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	25.655	148	192	IPR014977	WRC domain
Pfam	PF08879	3.9E-22	149	191	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 405 aa Download sequence Send to blast
MDLHLKQWRN QHESEQQPSA KIPKLLLDLD AHHHHHHHHH PQQQQQHASS EPSALPLFVS 60 ESNSKISGSL SAPLPDSNSR MGSYFSLAQW QELELQALIY RYMLAGAAVP PELLHPIKKS 120 LLYSSSYFLH HYQPALLQSG YWGRAAMDPE PGRCRRTDGK KWRCSRDVVP GQKYCERHVH 180 RGRNRSRKPV EMPTSSSTAA EANNSHVSVT ARFGGGGSGC GAVKASSPMT ASTLAAVANG 240 PNNFGLSRPS PPVDLLQLNH GSSESKTEPK GLFEAQNEVD DRSDGHILRH FFDDWPRTLQ 300 DPDNNGTNAS PMNSATCLTI SMPGNSSSDV SLKLSTGNGD SRREHHQQPP LNWAMGGWAA 360 SNQVASMGGP LAEALRSSST SNSSPTSVLH QLPKGSTSEI SYIST

Sequence ? help Back to Top

Protein Sequence Length: 405 aa Download sequence Send to blast

MDLHLKQWRN QHESEQQPSA KIPKLLLDLD AHHHHHHHHH PQQQQQHASS EPSALPLFVS  60
ESNSKISGSL SAPLPDSNSR MGSYFSLAQW QELELQALIY RYMLAGAAVP PELLHPIKKS  120
LLYSSSYFLH HYQPALLQSG YWGRAAMDPE PGRCRRTDGK KWRCSRDVVP GQKYCERHVH  180
RGRNRSRKPV EMPTSSSTAA EANNSHVSVT ARFGGGGSGC GAVKASSPMT ASTLAAVANG  240
PNNFGLSRPS PPVDLLQLNH GSSESKTEPK GLFEAQNEVD DRSDGHILRH FFDDWPRTLQ  300
DPDNNGTNAS PMNSATCLTI SMPGNSSSDV SLKLSTGNGD SRREHHQQPP LNWAMGGWAA  360
SNQVASMGGP LAEALRSSST SNSSPTSVLH QLPKGSTSEI SYIST

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed during the early stages of leaf development and expression decreases with the maturation of the leaf. {ECO:0000269\|PubMed:20023165}.
Uniprot	TISSUE SPECIFICITY: Strongly expressed in actively growing and developing tissues, such as roots, upper stems, and shoot tips containing the shoot apical meristem (SAM) and flower buds. Also expressed in mature flowers, but weakly expressed in mature stems and leaves. {ECO:0000269\|PubMed:12974814}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). {ECO:0000269\|PubMed:15200956, ECO:0000269\|PubMed:19453503, ECO:0000269\|PubMed:20023165}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM477984	4e-52	AM477984.2 Vitis vinifera contig VV78X100436.13, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016669518.1	0.0	PREDICTED: growth-regulating factor 3-like isoform X2
Swissprot	Q8L8A7	6e-83	GRF4_ARATH; Growth-regulating factor 4
TrEMBL	A0A1U8HZZ3	0.0	A0A1U8HZZ3_GOSHI; growth-regulating factor 3-like isoform X2
STRING	EOY08148	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1926	26	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52910.1	1e-66	growth-regulating factor 4

Publications ? help Back to Top
Kuijt SJ, et al. Interaction between the GROWTH-REGULATING FACTOR and KNOTTED1-LIKE HOMEOBOX families of transcription factors. Plant Physiol., 2014. 164(4): p. 1952-66 [PMID:24532604] Cao Y,Han Y,Jin Q,Lin Y,Cai Y Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa). Front Plant Sci, 2016. 7: p. 1750 [PMID:27933074]