PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A09G1605

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

TCP

Protein Properties

Length: 341aa MW: 36933.3 Da PI: 6.7207

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A09G1605	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	117.4	1.8e-36	85	184	4	108
TCP 4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaksaakskks 100 k++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++ti WLl+ a+pai+e+tgt++ +a ++ + + + ++s+ +++ + ++k++ Gh_A09G1605 85 PKRPSKDRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSDGETIRWLLEHAEPAIIEATGTGTVPAIAVsV----NGTLKIPTSSGKQEGELPKKRR 178 5899**********************************************************9999955521....1111111111222222222222 PP TCP 101 qksaasal 108 +++++ + Gh_A09G1605 179 RRPSN--S 184 22222..2 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	5.0E-30	89	172	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.559	89	143	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 341 aa Download sequence Send to blast
MECNRNQTIE EIDESINNNT AVIINEERHQ SNNTTPTFSA SDATLMDPNQ PMKEEDLTDT 60 EPQELANPTL VQVVPAARTQ QSLAPKRPSK DRHTKVEGRG RRIRMPAACA ARIFQLTREL 120 GHKSDGETIR WLLEHAEPAI IEATGTGTVP AIAVSVNGTL KIPTSSGKQE GELPKKRRRR 180 PSNSEFIDVN EHQSSVSSGL APIAPMTCNS FNLNSQGLVP IWPMGTFGVL PAAPGSNQAQ 240 LWAIPATAPP FFNVTGRPIS SFVSAMQPEV QDSSVGSMGS SVLPTSSSGA TSVSNGNNSS 300 NHSTTQMLRE FSLEILDKRE LQFLGRPANQ QAPCSKPDHK H

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	173	180	PKKRRRRP
2	174	179	KKRRRR

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.9512	0.0	ovule

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX578091	3e-83	JX578091.1 Gossypium hirsutum clone NBRI_GE10040 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016717372.1	0.0	PREDICTED: transcription factor TCP19-like
Swissprot	Q9LT89	7e-85	TCP19_ARATH; Transcription factor TCP19
TrEMBL	A0A1U8LS19	0.0	A0A1U8LS19_GOSHI; transcription factor TCP19-like
STRING	Gorai.006G197000.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12583	25	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51910.2	6e-85	TCP family protein