PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A09G1987
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 132aa    MW: 14570 Da    PI: 7.506
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A09G1987genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.63.7e-191668156
          AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                 ++y+GVr ++ +g + AeIrdp++  + +r++lg+f taeeAa+a+++a+ +++ge
  Gh_A09G1987 16 TRYRGVRSRP-WGTFGAEIRDPNQ--QGARVWLGTFNTAEEAARAYDRAAYAMRGE 68
                 68*****999.**********944..44**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.64E-161676No hitNo description
PfamPF008473.7E-131668IPR001471AP2/ERF domain
PROSITE profilePS5103223.1431775IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-221777IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.7E-311777IPR001471AP2/ERF domain
SMARTSM003804.1E-311781IPR001471AP2/ERF domain
PRINTSPR003671.2E-101829IPR001471AP2/ERF domain
PRINTSPR003671.2E-104157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 132 aa     Download sequence    Send to blast
MEGNYKGKEG SGGGTTRYRG VRSRPWGTFG AEIRDPNQQG ARVWLGTFNT AEEAARAYDR  60
AAYAMRGEFA ILNFPDEYPI GANAYRHSSS TGSSSSSSSA RGTGKQVFEI EYVDDNLLEE  120
LLEIDEKKKK KT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-3561173114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016733151.13e-93PREDICTED: ethylene-responsive transcription factor ERF096-like
RefseqXP_017610556.13e-93PREDICTED: ethylene-responsive transcription factor ERF096-like
SwissprotQ9LTC52e-38ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A1U8N2357e-92A0A1U8N235_GOSHI; ethylene-responsive transcription factor ERF096-like
STRINGGorai.006G250000.15e-69(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3575822
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43410.13e-24ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]