PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A09G2152
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 118aa    MW: 14015.7 Da    PI: 4.1797
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A09G2152genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM33.99.3e-1166114248
          NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleev..ikevdiykvePwdLp 48 
                  p+Gf+F Pt+eel++eyL +k+ +++l++ ++  ++e+ +y+++P++L+
  Gh_A09G2152  66 PVGFQFLPTNEELITEYLINKILHNPLPFGDFseVEEAVLYSTHPKSLD 114
                  89************************7775543499999*******996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.03E-963113IPR003441NAC domain
PROSITE profilePS5100512.23365118IPR003441NAC domain
PfamPF023652.4E-46690IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 118 aa     Download sequence    Send to blast
MVLIQNYEDL HWPFLHQISK NRVKEDEVEN PVKEDLHKWD YPIPVSENRV EEDREEDHYE  60
LDNPIPVGFQ FLPTNEELIT EYLINKILHN PLPFGDFSEV EEAVLYSTHP KSLDCILS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012483320.18e-64PREDICTED: protein FEZ-like isoform X2
TrEMBLA0A2P5WGL73e-74A0A2P5WGL7_GOSBA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2867023
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39820.15e-06NAC domain containing protein 94