PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A09G2161

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Dof

Protein Properties

Length: 299aa MW: 32977.4 Da PI: 6.6122

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A09G2161	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.9	5.3e-39	28	87	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +++al+cprCds ntkfCyynny+lsqPryfCk+CrryWtkGG lrnvPvGgg+rk ++s Gh_A09G2161 28 HHQALECPRCDSLNTKFCYYNNYNLSQPRYFCKSCRRYWTKGGVLRNVPVGGGCRKARHS 87 67999***************************************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-27	28	85	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.1E-33	30	86	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.04	32	86	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	34	70	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 299 aa Download sequence Send to blast
MQDTHSIGGG RIFSGGGGVG YGRLRPQHHQ ALECPRCDSL NTKFCYYNNY NLSQPRYFCK 60 SCRRYWTKGG VLRNVPVGGG CRKARHSKIK PSATITVAAA AVQPQLLQQQ HCNQLKENTH 120 SCSKSYSLTA DNFNVPATNN NNISGGSTVE AAPAITSHSS LINASDSKFY ENPNDLGFTE 180 MESFTSLITW SNNETVPFGF GNVFSEQGQW QQLQQQPKTV STGVEELRMG LLDPTVDIEL 240 ANLDNRSKGG YYGGFRPLDW EGSGDQGTTL LDLSNGSFDQ TYWNQNQWAD QDPPTLDLP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	8	16	GGRIFSGGG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017609300.1	1e-177	PREDICTED: dof zinc finger protein DOF5.4
TrEMBL	A0A2P5VPF2	0.0	A0A2P5VPF2_GOSBA; Uncharacterized protein
STRING	Gorai.006G268800.1	1e-161	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4482	26	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60850.1	7e-47	OBF binding protein 4