PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A09G2392

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

MYB

Protein Properties

Length: 231aa MW: 25829.1 Da PI: 9.3586

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A09G2392	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	41.9	2.3e-13	59	107	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrwqkyl 48 +g+W++ Ed++l d++ ++G g+W++ ++ + R++k+c++rw +yl Gh_A09G2392 59 KGAWSKLEDQKLTDYILKHGEGCWRSLPQAAAgLLRCGKSCRLRWVNYL 107 79*********************************************97 PP
2	Myb_DNA-binding	52.6	1.1e-16	113	155	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 rg++ ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+ Gh_A09G2392 113 RGKFGEDEEDLIIKLHALLGNR-WSLIAGRLP-GRTDNEVKNHWN 155 89******************.*****.*********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	7.4E-21	50	109	IPR009057	Homeodomain-like
PROSITE profile	PS51294	11.532	54	107	IPR017930	Myb domain
SuperFamily	SSF46689	1.84E-26	57	154	IPR009057	Homeodomain-like
SMART	SM00717	2.8E-10	58	109	IPR001005	SANT/Myb domain
Pfam	PF00249	1.1E-11	59	107	IPR001005	SANT/Myb domain
CDD	cd00167	3.11E-8	61	107	No hit	No description
PROSITE profile	PS51294	27.064	108	162	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.1E-24	110	162	IPR009057	Homeodomain-like
SMART	SM00717	1.5E-15	112	160	IPR001005	SANT/Myb domain
Pfam	PF00249	2.9E-15	113	155	IPR001005	SANT/Myb domain
CDD	cd00167	3.20E-11	115	158	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
MAAGDKHKPL FIYIYILLVS LFISPPLPLF WSVAFACLNS LPLGLQMRKP CCEKKDTNKG 60 AWSKLEDQKL TDYILKHGEG CWRSLPQAAA GLLRCGKSCR LRWVNYLRPD LKRGKFGEDE 120 EDLIIKLHAL LGNRWSLIAG RLPGRTDNEV KNHWNIHLKK KLLMMGIDPN NRRSLLSPTL 180 TKSNASNDSS SACQPFNPAT ASEAISCTCL PDLNLDLTIA PPLSHQNLAL N

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	1e-27	56	162	4	108	B-MYB
1h8a_C	1e-27	58	162	26	128	MYB TRANSFORMING PROTEIN
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expression in flowers increases as the flowers develop. {ECO:0000269\|PubMed:1840903}.
Uniprot	TISSUE SPECIFICITY: Expressed in roots, stems, leaves, seed pods and flowers. {ECO:0000269\|PubMed:1840903}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ459165	3e-70	AJ459165.1 Gossypium hirsutum partial myb135 gene, clone pGhMYB135.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012486405.1	1e-145	PREDICTED: myb-related protein 308-like
Swissprot	P81393	8e-72	MYB08_ANTMA; Myb-related protein 308
TrEMBL	A0A0D2S646	1e-144	A0A0D2S646_GOSRA; Uncharacterized protein
STRING	Gorai.006G192400.1	1e-144	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4	28	2646

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22640.1	5e-71	myb domain protein 3

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]