PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A09G2460
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 472aa    MW: 52941.9 Da    PI: 6.2024
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A09G2460genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS473.89e-145474691374
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                  l++lLl+cA++v++g+le+a+ +L+++s+laspdgd+mqR+aayfteALa r+++ +++l kal++++ +    see+ ++klf+e++P+lk++++++
  Gh_A09G2460  47 LIHLLLTCANHVANGSLENANIALEQISQLASPDGDTMQRMAAYFTEALADRILKAWPGLHKALNSTRIT--LLSEEILVRKLFFELFPFLKVAFVLT 142
                  689*************************************************************999987..7************************* PP

         GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                  NqaI ea+ege++vHiiD+++ +++QW+aL+qaL++Rpegpp+lRiTg+++    +ke l ++++rL + Ae+l++pf+fn+ v+ +le+l++++Lrv
  Gh_A09G2460 143 NQAIIEAMEGEKMVHIIDLNAAEPAQWVALIQALSARPEGPPHLRITGIHQ----QKEVLDQMAHRLIEEAEKLDIPFQFNP-VVCKLENLDVDKLRV 235
                  ***************************************************....9**************************.6888*********** PP

         GRAS 197 kpgEalaVnlvlqlhrll..........................................................desvsleserdevLklvkslsP 236
                  k+gEala+++vlqlh++l                                                          ++++s+  + d++L+++++lsP
  Gh_A09G2460 236 KTGEALAISSVLQLHSFLtsddellrkksplgsknlngihlqralqmnqstlgellekdmvngyspspdsasssplSSTGSV--KVDSFLNALWGLSP 331
                  **********************************************************************886654444444..469*********** PP

         GRAS 237 kvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaa 334
                  k++vv+eq+++hn+++++er+le+l+ y+alfd+ e++++r+s er kvE++l+g+ei+n++acegaer+erhe+lekW +rl+ aGF++vpls++ +
  Gh_A09G2460 332 KLMVVTEQDSNHNGSTLMERLLESLHSYAALFDCSESTVSRTSLERLKVEKMLFGEEIKNIIACEGAERKERHEKLEKWIQRLDLAGFGNVPLSYYGM 429
                  ************************************************************************************************** PP

         GRAS 335 kqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                    a++ll+ ++ dgy+++ee+g++v++W+drpL+svSaWr
  Gh_A09G2460 430 LHARRLLQGYNCDGYKMKEENGCIVICWQDRPLFSVSAWR 469
                  ***************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098558.50521449IPR005202Transcription factor GRAS
PfamPF035143.1E-14247469IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MFQDESSSVT SSSSPLQVFS MMSLSPNLGS PYPWLRELKS EERGLYLIHL LLTCANHVAN  60
GSLENANIAL EQISQLASPD GDTMQRMAAY FTEALADRIL KAWPGLHKAL NSTRITLLSE  120
EILVRKLFFE LFPFLKVAFV LTNQAIIEAM EGEKMVHIID LNAAEPAQWV ALIQALSARP  180
EGPPHLRITG IHQQKEVLDQ MAHRLIEEAE KLDIPFQFNP VVCKLENLDV DKLRVKTGEA  240
LAISSVLQLH SFLTSDDELL RKKSPLGSKN LNGIHLQRAL QMNQSTLGEL LEKDMVNGYS  300
PSPDSASSSP LSSTGSVKVD SFLNALWGLS PKLMVVTEQD SNHNGSTLME RLLESLHSYA  360
ALFDCSESTV SRTSLERLKV EKMLFGEEIK NIIACEGAER KERHEKLEKW IQRLDLAGFG  420
NVPLSYYGML HARRLLQGYN CDGYKMKEEN GCIVICWQDR PLFSVSAWRC RK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A8e-42474694375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, root epidermis, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ9083490.0DQ908349.1 Gossypium hirsutum clone LIB5327-014-A1-N1-G10_Gh410 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016669161.10.0PREDICTED: scarecrow-like protein 3
SwissprotQ9LPR80.0SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A1U8HT550.0A0A1U8HT55_GOSHI; scarecrow-like protein 3
STRINGGorai.006G125700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40982759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]