PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A09G2476
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 120aa    MW: 13554.2 Da    PI: 10.1726
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A09G2476genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.22e-1856105255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                  +y+GVr ++ +g+W++eIrdp     +  +r++lg+f+t + Aa+a+++a++k++g
  Gh_A09G2476  56 RYRGVRPRP-WGKWAVEIRDP-----HkeTRVWLGTFDTVKAAARAYDEAALKFKG 105
                  7*****999.**********6.....336************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.0E-3156114IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-2156114IPR016177DNA-binding domain
SMARTSM003808.8E-3456119IPR001471AP2/ERF domain
PfamPF008476.0E-1356105IPR001471AP2/ERF domain
PROSITE profilePS5103223.99956113IPR001471AP2/ERF domain
PRINTSPR003677.2E-115768IPR001471AP2/ERF domain
CDDcd000182.26E-1464115No hitNo description
PRINTSPR003677.2E-117995IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 120 aa     Download sequence    Send to blast
MEGDKTSAQL VESAAPTVQR SFADFRGSHA DSSFTETTSI IAPAAAYEET DERRRRYRGV  60
RPRPWGKWAV EIRDPHKETR VWLGTFDTVK AAARAYDEAA LKFKGSRAKL NFPELVRLVP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-2055113463ATERF1
3gcc_A1e-2055113463ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15156ERRRRY
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during the S phase of the cell cycle. {ECO:0000269|PubMed:23616605}.
UniprotTISSUE SPECIFICITY: Strongly expressed in proliferating cells. Detected in root tips, stipules, shoot apex, floral tissues, young siliques and abscission zones. {ECO:0000269|PubMed:23616605}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator of cell proliferation and axillary bud outgrowth. Involved in maintaining the structure of the shoot apical meristem as well as plastochron and phyllotaxy. Activates several genes involved in cell cycle regulation and dormancy breaking, including CYCD3-3, DPA, and BARD1. Strongly down-regulates DRM1, DRMH1, MARD1 and several genes encoding different types of cell wall-remodeling proteins. {ECO:0000269|PubMed:23616605}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Transiently up-regulated 6 to 15 hours after decapitation. {ECO:0000269|PubMed:23616605}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5823872e-38JX582387.1 Gossypium hirsutum clone NBRI_GE15207 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016670041.17e-83PREDICTED: ethylene-responsive transcription factor ERF110-like
RefseqXP_016730956.17e-83PREDICTED: ethylene-responsive transcription factor ERF110-like
SwissprotQ9FH545e-32EF114_ARATH; Ethylene-responsive transcription factor ERF114
TrEMBLA0A1U8MVU42e-81A0A1U8MVU4_GOSHI; ethylene-responsive transcription factor ERF110-like
STRINGGorai.009G255400.12e-34(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15224819
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61890.12e-26ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]