PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A10G0036

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NF-YA

Protein Properties

Length: 999aa MW: 109451 Da PI: 7.2607

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A10G0036	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	100.2	2.1e-31	110	166	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep++VNaKQy++Il+RRq+Rak+e+e+k +ksrkpylheSRh hAlrR+RgsgGrF Gh_A10G0036 110 EEPVFVNAKQYHGILRRRQSRAKAESENKA-IKSRKPYLHESRHLHALRRARGSGGRF 166 69**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	6.0E-36	108	169	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	37.834	109	169	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	1.9E-26	111	166	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	1.1E-22	112	134	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	114	134	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	1.1E-22	143	166	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 999 aa Download sequence Send to blast
MVLILTNFLL PDDNEIGEQQ KHSEPHNQSS SPATGLSPSA ITTPNIPYTT SQHAVAPATY 60 PYPDPYYRSI FAPYDAQPYP LQPYGGQPMV HLQLMGIQQA GVPLPSGAVE EPVFVNAKQY 120 HGILRRRQSR AKAESENKAI KSRKPYLHES RHLHALRRAR GSGGRFLNSK KNESKQNDAA 180 SGDKSQSNIN LNSNKSESKH AQARGKNGLY EEDDVAPSEL ILNEKQQEQQ NPSHLSNIRS 240 HRYPGSRRAF QAVENIIHGS NGHLSSSTSV SIEAPKGCLK FLLSHCSYSS SPAATGTGST 300 RKTALNRRCH TRTPKSARVS RLPRSKPFCF TKENSSSASV SNKLNRVKSS KSSKSSTSET 360 PAVFNPVVES HYEESEELRF APMAASKIAS CSALDHLAAG NGNLKNRLVD DEKSNTSSSK 420 SKTPPLQASF SPEIQCTATM ATSATTPACY VSGHLISGVT DKRKCRARGV LAVVRSRPNT 480 EKSNTSSSDT KTPPLQASFS PEIQSTAMAA TPACYGAGHL LSGVTDKRKC RARGVLAVAQ 540 AGPIDDGILS NGSNDASFEE DCDAGLDNKF SASMLPSPVE ASMHWLLSPC HEKDHDKDDN 600 QHSASSHCFL EEHKTRLSPS SPLLDLRVSF DWCNFSNDTS DATNSGTGKS QRSTNSMLIS 660 TQGPRFGLSL DCSSSPNVTP YSGLIPPKEE EKHGYNIDGR NSPLSADTLG SENVMQTPKS 720 DSSLERPVML SCSRLKDHKR PHHLHSEILS ITEDLRMASL SPESHLSIWD TNSSSIKFDR 780 LSTPSDSMDL SRFQKILDDR YLWNSNSTFD DVSQSELRIS WREGLASRIF EMDEFDSCRC 840 LSDEEEDLNV DAGNVPTIKN GDENKEKLHS PLQCSYAESI ATDGGGLAQS TDSDWNLCYK 900 NNLFQGPPTR IGTFVSIIVH GSIPCSYSKP HLALMELWFG SVSGSGFEPF QQEQSSPSTW 960 LSYNVHMPFT LAPMEIWFSS FTGFGFRNPK PEDLGRDRD

Sequence ? help Back to Top

Protein Sequence Length: 999 aa Download sequence Send to blast

MVLILTNFLL PDDNEIGEQQ KHSEPHNQSS SPATGLSPSA ITTPNIPYTT SQHAVAPATY  60
PYPDPYYRSI FAPYDAQPYP LQPYGGQPMV HLQLMGIQQA GVPLPSGAVE EPVFVNAKQY  120
HGILRRRQSR AKAESENKAI KSRKPYLHES RHLHALRRAR GSGGRFLNSK KNESKQNDAA  180
SGDKSQSNIN LNSNKSESKH AQARGKNGLY EEDDVAPSEL ILNEKQQEQQ NPSHLSNIRS  240
HRYPGSRRAF QAVENIIHGS NGHLSSSTSV SIEAPKGCLK FLLSHCSYSS SPAATGTGST  300
RKTALNRRCH TRTPKSARVS RLPRSKPFCF TKENSSSASV SNKLNRVKSS KSSKSSTSET  360
PAVFNPVVES HYEESEELRF APMAASKIAS CSALDHLAAG NGNLKNRLVD DEKSNTSSSK  420
SKTPPLQASF SPEIQCTATM ATSATTPACY VSGHLISGVT DKRKCRARGV LAVVRSRPNT  480
EKSNTSSSDT KTPPLQASFS PEIQSTAMAA TPACYGAGHL LSGVTDKRKC RARGVLAVAQ  540
AGPIDDGILS NGSNDASFEE DCDAGLDNKF SASMLPSPVE ASMHWLLSPC HEKDHDKDDN  600
QHSASSHCFL EEHKTRLSPS SPLLDLRVSF DWCNFSNDTS DATNSGTGKS QRSTNSMLIS  660
TQGPRFGLSL DCSSSPNVTP YSGLIPPKEE EKHGYNIDGR NSPLSADTLG SENVMQTPKS  720
DSSLERPVML SCSRLKDHKR PHHLHSEILS ITEDLRMASL SPESHLSIWD TNSSSIKFDR  780
LSTPSDSMDL SRFQKILDDR YLWNSNSTFD DVSQSELRIS WREGLASRIF EMDEFDSCRC  840
LSDEEEDLNV DAGNVPTIKN GDENKEKLHS PLQCSYAESI ATDGGGLAQS TDSDWNLCYK  900
NNLFQGPPTR IGTFVSIIVH GSIPCSYSKP HLALMELWFG SVSGSGFEPF QQEQSSPSTW  960
LSYNVHMPFT LAPMEIWFSS FTGFGFRNPK PEDLGRDRD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	2e-19	109	174	1	66	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.22069	0.0	boll

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM472177	3e-52	AM472177.2 Vitis vinifera contig VV78X243821.10, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016711041.1	0.0	PREDICTED: uncharacterized protein LOC107924972 isoform X2
TrEMBL	A0A2P5Q146	0.0	A0A2P5Q146_GOSBA; Uncharacterized protein
STRING	Gorai.011G004300.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30500.2	9e-47	nuclear factor Y, subunit A7