PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A10G0231

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Dof

Protein Properties

Length: 233aa MW: 25946.2 Da PI: 9.634

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A10G0231	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	115.6	2e-36	41	98	2	59
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknk 59 +++ lkcprCds ntkfCyynny+ sqPr+fCkaC+r+WtkGG+lrnvPvGggr++++ Gh_A10G0231 41 HQQPLKCPRCDSLNTKFCYYNNYNKSQPRHFCKACKRHWTKGGTLRNVPVGGGRKNKR 98 7899***********************************************9976554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-23	40	98	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	7.1E-32	43	97	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.41	45	99	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	47	83	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 233 aa Download sequence Send to blast
MGLSSKQVSS DGGHGWSQPL LQAQTLPKAS IIKKRHTQNQ HQQPLKCPRC DSLNTKFCYY 60 NNYNKSQPRH FCKACKRHWT KGGTLRNVPV GGGRKNKRLK PGIKAVSTAI NTSTASSDNS 120 NRLLLDSLMA IQWQQQHPFP PLLDCNNMLM GSSSSLLLPQ TQGQEFPFSS SSSSSISPSI 180 YNYTGEANSS RSQTWQLPSA SMDMANYWNL DDIDELVSTD LNNIPWVDSE IKP

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016711143.1	1e-172	PREDICTED: dof zinc finger protein DOF1.4-like
TrEMBL	A0A2P5XNK5	1e-171	A0A2P5XNK5_GOSBA; Uncharacterized protein
STRING	Gorai.009G170200.1	1e-70	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1269	28	96

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51700.1	7e-31	DOF zinc finger protein 1