PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A10G0338

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

G2-like

Protein Properties

Length: 348aa MW: 40223.8 Da PI: 7.6806

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A10G0338	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	100.6	1.1e-31	79	132	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH++Fv+ave+LGG+e+AtPk +l+lm+v gL+++hvkSHLQ+YR+ Gh_A10G0338 79 PRLRWTPDLHHSFVRAVERLGGQERATPKLVLQLMNVRGLSIAHVKSHLQMYRS 132 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.649	75	135	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.1E-29	75	133	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.51E-14	78	133	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.0E-22	79	134	IPR006447	Myb domain, plants
Pfam	PF00249	6.3E-9	80	131	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence Send to blast
MIEMHDEEQG EDVCAMPSRS RKCSFFDLND EAGSERDCIG ETSVEEEIEN ITEGSSSNNN 60 NGNGNDRRRV RQYVRSKLPR LRWTPDLHHS FVRAVERLGG QERATPKLVL QLMNVRGLSI 120 AHVKSHLQMY RSKKLDEAGQ VLSQSKTAIQ GKGEFGSLLC QAITTFSPHH YHQQQHFRME 180 NGGIVLASES LDGSDTTFKA NFPRHHQFPN SFISKAFGQE NGFYIQNQIH GTGPIRAMAS 240 RFLEEKRWHP FERISNRWKV NGNMYKDMQS QSHCFWQRPS SDEDKHEPLT KFSSCRTEFE 300 WNQDKVLKDR ERLPDLQLRL SQRNGNFDEE KNNHCKGTHE ISTQLSLS

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence Send to blast

MIEMHDEEQG EDVCAMPSRS RKCSFFDLND EAGSERDCIG ETSVEEEIEN ITEGSSSNNN  60
NGNGNDRRRV RQYVRSKLPR LRWTPDLHHS FVRAVERLGG QERATPKLVL QLMNVRGLSI  120
AHVKSHLQMY RSKKLDEAGQ VLSQSKTAIQ GKGEFGSLLC QAITTFSPHH YHQQQHFRME  180
NGGIVLASES LDGSDTTFKA NFPRHHQFPN SFISKAFGQE NGFYIQNQIH GTGPIRAMAS  240
RFLEEKRWHP FERISNRWKV NGNMYKDMQS QSHCFWQRPS SDEDKHEPLT KFSSCRTEFE  300
WNQDKVLKDR ERLPDLQLRL SQRNGNFDEE KNNHCKGTHE ISTQLSLS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	2e-18	80	134	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-18	80	134	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-18	80	134	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-18	80	134	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
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Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.5258	0.0	boll

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY632360	1e-159	AY632360.1 Gossypium hirsutum BAC 106I22, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016711303.1	0.0	PREDICTED: uncharacterized protein LOC107925201
Refseq	XP_016711304.1	0.0	PREDICTED: uncharacterized protein LOC107925201
Refseq	XP_016711305.1	0.0	PREDICTED: uncharacterized protein LOC107925201
TrEMBL	A0A1U8L9L7	0.0	A0A1U8L9L7_GOSHI; uncharacterized protein LOC107925201
STRING	Gorai.011G039000.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM363	28	184

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	2e-37	G2-like family protein