PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A10G0429

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Trihelix

Protein Properties

Length: 350aa MW: 39366.2 Da PI: 8.3073

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A10G0429	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	48.8	1.9e-15	23	118	2	86
trihelix 2 WtkqevlaLiearr.emeerlrrg........klkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr..tsessstcpyfdqle 86 Wt +e+++Liea++ + e+r++r+ k + +W++v ++++ +g+ rs++qC++kw+nl ++ykk++e ++k ++++ s+ + + ++e Gh_A10G0429 23 WTVNETMVLIEAKEmDYERRMKRSgdhsegwnKPTELRWKWVEDYCWGKGCLRSQNQCNDKWDNLMRDYKKVREYQRKVaeREGNDSKERSYWEME 118 ***********95444444443333333435999*************************************999843355566677777776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.876	15	88	IPR017877	Myb-like domain
Pfam	PF13837	2.5E-11	22	118	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence Send to blast
MHLMMDDQGG NNAVTREYRK GNWTVNETMV LIEAKEMDYE RRMKRSGDHS EGWNKPTELR 60 WKWVEDYCWG KGCLRSQNQC NDKWDNLMRD YKKVREYQRK VAEREGNDSK ERSYWEMEKN 120 ERKEKNLPSN MLCQIYDRLE EVVEKKGAQT VAATAGGGGG SDPNIPNISY VMDRPMVSTF 180 QPSLPPLLQH QLSAPISAAI PLPLPQGSPQ LPPPPAPIIQ PPPLSFAQPL PTIGSSDSDT 240 SEHSDSPAKR RRRGGGNGEG TSGTPNNTKE VSTAISRSAS IIAEAIQASE EREERRHRDL 300 LSFHERRLKI EESKTEINKK GMDGLVDAIN KLANSIFALA SHKNQSSAPK

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence Send to blast

MHLMMDDQGG NNAVTREYRK GNWTVNETMV LIEAKEMDYE RRMKRSGDHS EGWNKPTELR  60
WKWVEDYCWG KGCLRSQNQC NDKWDNLMRD YKKVREYQRK VAEREGNDSK ERSYWEMEKN  120
ERKEKNLPSN MLCQIYDRLE EVVEKKGAQT VAATAGGGGG SDPNIPNISY VMDRPMVSTF  180
QPSLPPLLQH QLSAPISAAI PLPLPQGSPQ LPPPPAPIIQ PPPLSFAQPL PTIGSSDSDT  240
SEHSDSPAKR RRRGGGNGEG TSGTPNNTKE VSTAISRSAS IIAEAIQASE EREERRHRDL  300
LSFHERRLKI EESKTEINKK GMDGLVDAIN KLANSIFALA SHKNQSSAPK

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.2547	0.0	boll\| ovule

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017648109.1	0.0	PREDICTED: uncharacterized protein LOC108488338 isoform X1
TrEMBL	A0A1U8IK24	0.0	A0A1U8IK24_GOSHI; uncharacterized protein LOC107897481
STRING	Gorai.011G050400.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3493	26	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	4e-61	Trihelix family protein