PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A10G0469
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family M-type_MADS
Protein Properties Length: 182aa    MW: 20741.5 Da    PI: 9.044
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A10G0469genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF68.66e-223074448
                 -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
       SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48
                 e +s+rqvtfskRr+g++KKA+ELS+LC+a+v v+ +s++g++y+
  Gh_A10G0469 30 EVESKRQVTFSKRRQGLFKKAKELSTLCGANVGVLTISKSGRVYT 74
                 6689***************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554553.53E-211977IPR002100Transcription factor, MADS-box
PROSITE profilePS5006624.1231979IPR002100Transcription factor, MADS-box
SMARTSM004322.1E-241978IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-172141IPR002100Transcription factor, MADS-box
PfamPF003199.4E-223074IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-174156IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-175677IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MEDVAMPITT EAKRARSSRG RQRIEIKKLE VESKRQVTFS KRRQGLFKKA KELSTLCGAN  60
VGVLTISKSG RVYTTDDVDI VLNRRLAESS SSHDNDSVRR QNEIVERRTN AGFGLDELIE  120
NLAVEKLVEY VAVLKELREK AAFRLEELSI QDSSSLWPFV ADREVNKDGF VNNFMAEVKD  180
YN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016676461.11e-130PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLA0A1U8IE391e-128A0A1U8IE39_GOSHI; agamous-like MADS-box protein AGL62
STRINGGorai.011G055800.11e-119(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46972052
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72350.16e-25M-type_MADS family protein