PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A10G0492
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRF
Protein Properties Length: 328aa    MW: 36506.8 Da    PI: 9.1096
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A10G0492genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC79.23.9e-2574118145
          WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                  d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e+
  Gh_A10G0492  74 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVEA 118
                  79****************************************986 PP
2QLQ57.63.7e-20941234
          QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqa 34
                  FT++Q+q+L++Q+l++Ky+++++P+Pp+Ll  
  Gh_A10G0492  9 LFTPNQWQELEHQALIFKYMVSGVPIPPQLLYS 41
                 6*****************************965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.0E-10844IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166621.858944IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088802.6E-151042IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.47974118IPR014977WRC domain
PfamPF088792.9E-2175117IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MISARNKYLF TPNQWQELEH QALIFKYMVS GVPIPPQLLY SVKTSFDSSL ASHLFPHQPT  60
GWGCFQVGFG RKPDPEPGRC RRTDGKKWRC SKEAYPDSKY CERHMHRGRN RSRKPVEANS  120
SSSTAPPAPP TTAAASILSP SFPSINSNLP TSSSSLSFSP MATENFTHFD PFLYSHSSTR  180
LHGSGLSVPS HHFLDSGTGI DYPQTDKLYR YVHGTREGVD ERSFFPEASA SVRVVSDSYQ  240
PLTMVQSFGD NNGSKQGQQC FVLGTDIKSA KPIKLEKDEG TQKPVHQFLG DWTQGNNNGS  300
WLDLASNSRV QSGNFFSISP IIFGFFHI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016678374.10.0PREDICTED: growth-regulating factor 5-like isoform X1
RefseqXP_017647054.10.0PREDICTED: growth-regulating factor 5 isoform X1
TrEMBLA0A1U8IR720.0A0A1U8IR72_GOSHI; growth-regulating factor 5-like isoform X1
STRINGGorai.011G058800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45672651
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.11e-63growth-regulating factor 5