PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A10G0493
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 545aa    MW: 60129.2 Da    PI: 6.0969
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A10G0493genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS271.92e-831625372374
         GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                  ++lL  cA a+++g+l++aq+lL  l+elas++gd+++Rla + ++AL ++l++s+     + +p + ++++ +    +l  f+evsP++ f + +aN
  Gh_A10G0493 162 EQLLNPCASAITTGNLTRAQHLLYVLNELASSTGDANHRLADHGLRALTHHLSSSSA----STAPVTFASTEPKFFQRSLLKFYEVSPWFAFPNTIAN 255
                  689**************************************************9332....233444443445555556666**************** PP

         GRAS 100 qaIleavege....ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg.........skeeleetgerLakfAeelgvpfefnvlva 183
                    Il+ +++e    + +Hi+D+++s+G+QWp+Ll+aL+ R+ ++pp +RiT+v++ +++              +   +rL  fA+++++++++n l  
  Gh_A10G0493 256 ASILQILAQEpdktRNLHILDIGVSHGVQWPTLLEALSRRSgGPPPVVRITVVAATAENnqitdtpfsIGPPGHDFYSRLPGFAKSMNINLQINRLEN 353
                  ********999887889************************55667*******997777888888887777889999******************999 PP

         GRAS 184 krledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse...sFlerflealeyysalfdsleaklpre 278
                  + ++ l+ ++++ ++gE+l+V+ +++lh+l    ++ +++r+e+Lk+++sl+Pk v+++e+++d++ +   +F+++f++ +ey ++++ds+++ +   
  Gh_A10G0493 354 HPIQHLNAQTINNSHGETLIVCAQFRLHHLN---HNRPDQRTEFLKVLRSLEPKGVILSENNMDCSCSscgDFATGFSRRVEYLWKFLDSTSSAF--- 445
                  9*****************************8...77777788********************9984433459*******************7775... PP

         GRAS 279 seerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                   + r + Er++++ e+ ++++++g++    +e +ekW er++ +GF++  ++e+a + a++llrk++ ++++ vee++g++ l Wk++p+ ++S W+
  Gh_A10G0493 446 -KGRESEERRVMEGEAAKALTNQGEM----NEGKEKWYERMQGVGFRAEVFGEDAIDGARALLRKYDsNWEMIVEEKEGCIGLWWKGQPVSFCSLWK 537
                  .677777777778889********99....9************************************9999*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098542.223135516IPR005202Transcription factor GRAS
PfamPF035146.9E-81162537IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042446Biological Processhormone biosynthetic process
GO:2000032Biological Processregulation of secondary shoot formation
Sequence ? help Back to Top
Protein Sequence    Length: 545 aa     Download sequence    Send to blast
MTLEESAEPN PSQDHILDWL EDSASLLPSF LDDPYSPGDI NGCQWWDPNH DFGQDLITIG  60
AAVASINSPA IAAAVSNVDA GLVQSDSAIV NPPVPLSSSK RRRPTDSIVP RMSKKSSNGK  120
NDENEDGKAG VEEVMGNKRS AGNKKNKSSG NNGNNKEGRW AEQLLNPCAS AITTGNLTRA  180
QHLLYVLNEL ASSTGDANHR LADHGLRALT HHLSSSSAST APVTFASTEP KFFQRSLLKF  240
YEVSPWFAFP NTIANASILQ ILAQEPDKTR NLHILDIGVS HGVQWPTLLE ALSRRSGGPP  300
PVVRITVVAA TAENNQITDT PFSIGPPGHD FYSRLPGFAK SMNINLQINR LENHPIQHLN  360
AQTINNSHGE TLIVCAQFRL HHLNHNRPDQ RTEFLKVLRS LEPKGVILSE NNMDCSCSSC  420
GDFATGFSRR VEYLWKFLDS TSSAFKGRES EERRVMEGEA AKALTNQGEM NEGKEKWYER  480
MQGVGFRAEV FGEDAIDGAR ALLRKYDSNW EMIVEEKEGC IGLWWKGQPV SFCSLWKLDV  540
KVEES
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B4e-4015853784473Protein SHORT-ROOT
5b3h_B2e-4015853730419Protein SHORT-ROOT
5b3h_E2e-4015853730419Protein SHORT-ROOT
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in epidermal and cortical root cells. {ECO:0000269|PubMed:15961669}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking. May be a target of DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK) (PubMed:15961669). Is essential for Nod factor-elicited expression of ERN1 (PubMed:23077241). {ECO:0000269|PubMed:15961669, ECO:0000269|PubMed:23077241}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced after treatment with Sinorhizobium meliloti. {ECO:0000269|PubMed:15961669}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016678371.10.0PREDICTED: nodulation-signaling pathway 1 protein-like
SwissprotQ4VYC80.0NSP1_MEDTR; Nodulation-signaling pathway 1 protein
TrEMBLA0A1U8IJV40.0A0A1U8IJV4_GOSHI; nodulation-signaling pathway 1 protein-like
STRINGGorai.011G058900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM107472834
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.11e-171GRAS family protein
Publications ? help Back to Top
  1. Cerri MR, et al.
    Medicago truncatula ERN transcription factors: regulatory interplay with NSP1/NSP2 GRAS factors and expression dynamics throughout rhizobial infection.
    Plant Physiol., 2012. 160(4): p. 2155-72
    [PMID:23077241]
  2. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]