PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A10G0627

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NAC

Protein Properties

Length: 248aa MW: 28151.1 Da PI: 9.2681

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A10G0627	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	114.4	1.2e-35	14	137	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 +p GfrFhPtdeelvv+yLk+k+ +l++ +vi+e+d++++ Pw++p + +++ yfFs+r+ + + ++ +ra+ sgyWk gk+k++l++ ++ Gh_A10G0627 14 MPIGFRFHPTDEELVVHYLKRKALCLPLPA-SVIPEFDVFQTIPWSMPGDM---KESKYFFSTRHDSFIN-NKCKRAAGSGYWKPIGKEKPILASgTN 106 699*************************.99***********554...456799998765.7899999***********99677 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 ++vg+++ ++f + + ++g++t+W++h+yrl Gh_A10G0627 107 QVVGMRRAFIFCQRKCSNGTQTRWLLHQYRL 137 78*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.57E-38	9	166	IPR003441	NAC domain
PROSITE profile	PS51005	41.508	14	167	IPR003441	NAC domain
Pfam	PF02365	1.4E-20	15	137	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence Send to blast
MESQNFVANG GVKMPIGFRF HPTDEELVVH YLKRKALCLP LPASVIPEFD VFQTIPWSMP 60 GDMKESKYFF STRHDSFINN KCKRAAGSGY WKPIGKEKPI LASGTNQVVG MRRAFIFCQR 120 KCSNGTQTRW LLHQYRLVDS MPTLDSTQIS RSEMCGPDWL VFRVFQRKRS RRGKKHEVVS 180 HKSETSSAMN MPSCIDFTVE DSSVFGPPPQ PTSPSSTEIT EVSSHGLDQE ESSAFITSYY 240 SNGCMRNR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-30	12	170	15	168	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-30	12	170	15	168	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-30	12	170	15	168	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-30	12	170	15	168	NO APICAL MERISTEM PROTEIN
3swm_A	1e-30	12	170	18	171	NAC domain-containing protein 19
3swm_B	1e-30	12	170	18	171	NAC domain-containing protein 19
3swm_C	1e-30	12	170	18	171	NAC domain-containing protein 19
3swm_D	1e-30	12	170	18	171	NAC domain-containing protein 19
3swp_A	1e-30	12	170	18	171	NAC domain-containing protein 19
3swp_B	1e-30	12	170	18	171	NAC domain-containing protein 19
3swp_C	1e-30	12	170	18	171	NAC domain-containing protein 19
3swp_D	1e-30	12	170	18	171	NAC domain-containing protein 19
4dul_A	1e-30	12	170	15	168	NAC domain-containing protein 19
4dul_B	1e-30	12	170	15	168	NAC domain-containing protein 19
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	165	171	QRKRSRR

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.23953	3e-37	boll

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX589385	1e-78	JX589385.1 Gossypium hirsutum clone NBRI_GE24075 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016678202.1	0.0	PREDICTED: NAC domain-containing protein 83-like
TrEMBL	A0A1U8IJ59	0.0	A0A1U8IJ59_GOSHI; NAC domain-containing protein 83-like
TrEMBL	A0A2P5WH21	0.0	A0A2P5WH21_GOSBA; Uncharacterized protein
STRING	Gorai.011G087700.1	1e-168	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7874	25	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13180.1	3e-51	NAC domain containing protein 83