PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A10G0741
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 226aa    MW: 25130.8 Da    PI: 10.0325
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A10G0741genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.52e-19132181255
          AP2   2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  +y+GVr+++ +g+W+AeIrd +     +  r++lg+f+tae Aa a+++a++ ++g
  Gh_A10G0741 132 RYRGVRRRP-WGKWAAEIRDpF-----KaVRVWLGTFDTAEAAAMAYDEAALGFRG 181
                  7********.**********66.....56**********************98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103225.067132189IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-22132191IPR016177DNA-binding domain
SMARTSM003804.0E-36132195IPR001471AP2/ERF domain
PfamPF008476.0E-13132181IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.3E-32132190IPR001471AP2/ERF domain
PRINTSPR003671.5E-11133144IPR001471AP2/ERF domain
CDDcd000186.85E-15140191No hitNo description
PRINTSPR003671.5E-11155171IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MKREEGSWSS SSVRREREMR AVVSALTHVV AGEEPVADNE NLDGFGSCIG DNGAASSWRR  60
SRQKRGREQL EVKEKEGSSS GSRGGNFRRR GGGYSYSAGV QDTEAEANTR AQLAPTYEYK  120
SNEKYKEEAG RRYRGVRRRP WGKWAAEIRD PFKAVRVWLG TFDTAEAAAM AYDEAALGFR  180
GSKAKLNFPE NVKLRSPPSN LTTTLLPIFD SPNTLFHPDN SSLPMS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-22130192366ATERF1
3gcc_A2e-22130192366ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15964RSRQKR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016699404.11e-165PREDICTED: ethylene-responsive transcription factor ABR1-like
TrEMBLA0A1U8KFD21e-164A0A1U8KFD2_GOSHI; ethylene-responsive transcription factor ABR1-like
STRINGGorai.011G114900.11e-105(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2481534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64750.11e-22ERF family protein