PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A10G0750
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 223aa    MW: 25232.8 Da    PI: 7.0422
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A10G0750genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.55.5e-09124164954
                  HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                   r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  Gh_A10G0750 124 ARHRRERISEKIRILKRLVPGG-----TKMDTASMLDEAIRYVKFL 164
                  699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.977115164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.27E-14120183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.7E-13121170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.8E-12121176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.65E-10121168No hitNo description
PfamPF000102.1E-6125164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010197Biological Processpolar nucleus fusion
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MDINPALKLQ THTWNLEIPM DDHILHDQLP LNPIWPSFPL QTPFSTSTTP THLPSATPVY  60
STHHNDQLGH LVEEGEEPEE ELSAMKEMLY KIAAMQPVDI DPSTIRKPKR RNVRISDDPQ  120
SVAARHRRER ISEKIRILKR LVPGGTKMDT ASMLDEAIRY VKFLKRQILE LQRSNANQQP  180
PPPPPPYPVE WQVAPNKPLG STSETQTGHG FTFDANGGKP LVL
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6146740.0JX614674.1 Gossypium hirsutum clone NBRI_GE58242 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016676747.11e-164PREDICTED: transcription factor HEC3-like
TrEMBLA0A1U8IF951e-163A0A1U8IF95_GOSHI; transcription factor HEC3-like
STRINGGorai.011G116100.11e-159(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44492754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00120.12e-46bHLH family protein