PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A10G1164
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 517aa    MW: 56294.8 Da    PI: 7.2155
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A10G1164genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.11.5e-08337384455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Gh_A10G1164 337 SHSLAERVRREKISERMKFLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 384
                  8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.81E-10331388No hitNo description
SuperFamilySSF474596.67E-17331401IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.523333383IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.1E-17333404IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-5337384IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-9339389IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 517 aa     Download sequence    Send to blast
MEKDQVFMGE ELNRAAAAQA GWNSCSSGME METDELNCVG SCFLNRKWHN SMDQSDPFES  60
ALSSMVCSPA ASNAGSTNFP ASGDNTMMTD LIGKLGNICN TGDISPQSFI KPPNNNNNCS  120
SNTSCYTSSL DSPPKLNLSM MGGNQILKHP SLVPVSADPG FAERAARYSC FNGLNAQLGV  180
TEAEFVQLTR VSTNQSIMVT GSQVHVPDSN KNTLQNGNSC SHKRNSRLSR CSSPENGDSK  240
DESSISEQIP GVGSSIKAQN DANARKRKSM PRGKAKETPS PAAADAKIAE ENDESTAKRS  300
KQQNDSAKAE NKENPKPPEP PKDYIHVRAR RGQATDSHSL AERVRREKIS ERMKFLQDLV  360
PGCNKVTGKA LMLDEIINYV QSLQRQVEFL SMKLATVNPR MNANTEALLS KDMFRSRGSL  420
PHSHYPMDSS VLAFGLRYQP QQGLPMNNVI SNDTQIQFSM NPANAALHKT QGLQLPPVDG  480
ITDANPQIGS FWDDDLQSIV QMGFGQNPPQ SCQSKHS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.209170.0boll
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016730547.10.0PREDICTED: transcription factor bHLH62-like isoform X1
TrEMBLA0A1U8MUP40.0A0A1U8MUP4_GOSHI; transcription factor bHLH62-like isoform X1
STRINGGorai.011G150200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23322775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.12e-79bHLH family protein