PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A10G1210
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 340aa    MW: 36629.9 Da    PI: 9.7326
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A10G1210genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.14.8e-06267292630
                  HHHHHHHHHHHHHHHHHHHCTSCC.C CS
          HLH   6 nerErrRRdriNsafeeLrellPk.a 30 
                  +++Er RR ri  ++ +L+el+P+ +
  Gh_A10G1210 267 SIAERERRTRISGKLKKLQELVPNmD 292
                  689********************955 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.83E-5264297IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.72E-4265296No hitNo description
Gene3DG3DSA:4.10.280.108.5E-5266297IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MYPSSSSQKP MGQSGLTRYG SAPGSFLANA VDSVIGADPN LVGHYFSAAD SSSLTSESTC  60
KVSSSNDPRE PKSAAAAAPA PPHPPPHHPH GSYPAPSSSS LLRQRSSPAG FLSHLTSENG  120
FSVTMGNRNY SSQGSGNGGH GVSRLKSQLS FTRQDSLSQI SEVSENLVDG VSSNSNHQNP  180
AHSFAAAGFG MDSWDNTNSI VFSAPSSKRA KNLDGDIYNC FNALETQFSL PQTTLEMATV  240
EKLLHIPEDS VPCKIRAKRG CATHPRSIAE RERRTRISGK LKKLQELVPN MDKVITKRAM  300
QTCWIWLCSI LKAFKTKFRN STKNWKVVHV GANKAHDDEG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.98130.0boll| ovule| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012456514.10.0PREDICTED: transcription factor bHLH128
RefseqXP_016677778.10.0PREDICTED: transcription factor bHLH128-like
RefseqXP_016699171.10.0PREDICTED: transcription factor bHLH128-like
TrEMBLA0A0D2UT460.0A0A0D2UT46_GOSRA; Uncharacterized protein
TrEMBLA0A1U8K9J20.0A0A1U8K9J2_GOSHI; transcription factor bHLH128-like
TrEMBLA0A2P5XVF40.0A0A2P5XVF4_GOSBA; Uncharacterized protein
STRINGGorai.011G144600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM117772631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.12e-58bHLH family protein