PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A10G1234

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

FAR1

Protein Properties

Length: 158aa MW: 18598.3 Da PI: 10.2227

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A10G1234	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	72.8	7.8e-23	1	83	10	91
FAR1 10 vGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +GF++r++++++s ++++i+ r+fvCskeg+r+e+ +k +++ ++r+ tr gC+a+l++ ++ gkw+++ +++eHnH l+p Gh_A10G1234 1 MGFTIRNNRTRRSLKDNSIIGREFVCSKEGFRAEKYTKkETRVFTSRPATREGCNAMLRIAAKDGGKWVIYGFVKEHNHVLNP 83 7******************************99888233444699******************************9975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.6E-20	1	83	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 158 aa Download sequence Send to blast
MGFTIRNNRT RRSLKDNSII GREFVCSKEG FRAEKYTKKE TRVFTSRPAT REGCNAMLRI 60 AAKDGGKWVI YGFVKEHNHV LNPSKVPPRR SHRIAFCEDE KDLKIRELST ELHREKKKSA 120 AYQEQLQMVL NYIEEHTQRL SLKVNLVSNN LRELEYED

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016677728.1	1e-114	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A0B0PJW4	1e-113	A0A0B0PJW4_GOSAR; Far1-related sequence 5-like protein
TrEMBL	A0A2P5YIA9	1e-113	A0A2P5YIA9_GOSBA; Uncharacterized protein
STRING	Gorai.011G141900.1	1e-112	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM18086	8	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	1e-33	FAR1 family protein