PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A10G1246
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 104aa    MW: 12093.4 Da    PI: 4.2314
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A10G1246genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS49.39.1e-161104270369
         GRAS 270 sleaklpreseerikvErellgreivnvvacegae....rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve...eesgslvl 360
                  +le+++ ++s+e+ ++Ere  +r iv v+ac  ++     rer+e+ ++W+erl+ea F+pv +s+++++++k+ll++++  g+ +    +++  l+l
  Gh_A10G1246   1 MLEESFTPTSNEKLMLERE-CSRGIVRVLACDDDQdnegERERRERGSQWSERLKEA-FSPVGFSDDVVDDVKALLKRYN-PGWALAqpdQNETGLYL 95 
                  5899999************.89*********87764445689*************98.**********************.7777764436677888* PP

         GRAS 361 gWkdrpLvs 369
                  +Wk++p+v+
  Gh_A10G1246  96 TWKEEPVVW 104
                  ******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035143.2E-131104IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 104 aa     Download sequence    Send to blast
MLEESFTPTS NEKLMLEREC SRGIVRVLAC DDDQDNEGER ERRERGSQWS ERLKEAFSPV  60
GFSDDVVDDV KALLKRYNPG WALAQPDQNE TGLYLTWKEE PVVW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B3e-233104370468Protein SHORT-ROOT
5b3h_B3e-233104316414Protein SHORT-ROOT
5b3h_E3e-233104316414Protein SHORT-ROOT
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012457395.19e-68PREDICTED: protein SHORT-ROOT-like
TrEMBLA0A0D2RM662e-66A0A0D2RM66_GOSRA; Uncharacterized protein
STRINGGorai.011G140300.14e-67(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3564222
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37650.19e-18GRAS family protein