PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A10G1280

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 150aa MW: 16844.3 Da PI: 9.4207

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A10G1280	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17.5	7.7e-06	33	72	10	54
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + R d++ +++ +L++l+ + +K + a++L +A+eYI+ L Gh_A10G1280 33 KDRKDKVGERIVTLQQLVSPY-----GKTDTASVLLQAMEYIQFL 72 678899999*******999.....9**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.287	23	72	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.8E-9	23	83	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.004	29	78	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.66E-12	29	90	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.33E-5	33	77	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 150 aa Download sequence Send to blast
MMENKRSPCS VDHSSFTPLA SKRQKSDLLI STKDRKDKVG ERIVTLQQLV SPYGKTDTAS 60 VLLQAMEYIQ FLHEQVKVLS APYLQTSPTN NMQVSIKPAQ EQEHYSLRSQ GLCLVPLSYT 120 MGVVHSNGAD IWAPIKTASP KFDKPFTQFN

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.13573	0.0	boll\| ovule

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016677550.1	1e-109	PREDICTED: transcription factor bHLH113-like isoform X1
Swissprot	Q7XJU2	2e-58	BH153_ARATH; Transcription factor bHLH153
TrEMBL	A0A1U8IHH6	1e-108	A0A1U8IHH6_GOSHI; transcription factor bHLH113-like isoform X1
STRING	Gorai.011G135700.1	1e-104	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3316	27	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G05710.5	7e-61	bHLH family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]