PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A10G1336
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 349aa    MW: 38534 Da    PI: 7.8796
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A10G1336genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.81.6e-077293426
                 ---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH  4 elCrffartGtCkyGdrCkFaHg 26
                 +lC+++++ G+C++Gd+C + H+
  Gh_A10G1336 72 KLCKYWMA-GHCHRGDKCWYLHS 93
                 69******.*********99996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.6336895IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-76993IPR000571Zinc finger, CCCH-type
SMARTSM003566.5E-57094IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.8E-67292IPR000571Zinc finger, CCCH-type
PfamPF006428.1E-57293IPR000571Zinc finger, CCCH-type
SuperFamilySSF509781.19E-3992147IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.104.2E-4093348IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003207.7E-699138IPR001680WD40 repeat
PfamPF004004.9E-5103138IPR001680WD40 repeat
PROSITE profilePS5008213.148106147IPR001680WD40 repeat
PROSITE profilePS5029418.642106349IPR017986WD40-repeat-containing domain
PROSITE patternPS006780125139IPR019775WD40 repeat, conserved site
PRINTSPR003208.7E-6125139IPR020472G-protein beta WD-40 repeat
SMARTSM0032077178215IPR001680WD40 repeat
SuperFamilySSF509781.19E-39185348IPR017986WD40-repeat-containing domain
SMARTSM003201.9E-7222259IPR001680WD40 repeat
PfamPF004005.9E-5226259IPR001680WD40 repeat
PROSITE profilePS5008214.184229268IPR001680WD40 repeat
PROSITE patternPS006780246260IPR019775WD40 repeat, conserved site
PRINTSPR003208.7E-6246260IPR020472G-protein beta WD-40 repeat
SMARTSM003200.0043262299IPR001680WD40 repeat
PfamPF004000.0019264297IPR001680WD40 repeat
SMARTSM00320120305346IPR001680WD40 repeat
PRINTSPR003208.7E-6333347IPR020472G-protein beta WD-40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
METLHKTLDL SVYRTNFRIR CLLRMNVHGR ERKRAGNNGV FSYSKANDIF RRNPNPPPIS  60
SPSTLKSPDQ NKLCKYWMAG HCHRGDKCWY LHSWSLGDGF TMLAKLEGHK KTIRGIALPS  120
GHDKLYSGSS DGTARIWDGH TGKCLHFSNL GDEAGSLITE GAWVFIGMKN VVKALNIHSD  180
LELNLKGPVG QVYAMIVAGD MLFAGAQNGG IIAWRASCET DSFQLAASLE GHNGAVSCLA  240
VGDKMLFSGS LDKTIRVWDI DTFQCIKTFS GHADVVTSLV HCNGYLFSSS LDCTIKVLFA  300
TEGQNWVVLY THKEENGVLI LCGMNDAETK PVLFCSYNDD TVRLYDLPS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A7e-191033498323Tako8
6g6n_A7e-191033498323Tako8
6g6n_B7e-191033498323Tako8
6g6n_C7e-191033498323Tako8
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016677590.10.0PREDICTED: zinc finger CCCH domain-containing protein 48-like
RefseqXP_016677591.10.0PREDICTED: zinc finger CCCH domain-containing protein 48-like
SwissprotQ9FNZ21e-106C3H48_ARATH; Zinc finger CCCH domain-containing protein 48
TrEMBLA0A1U8IHN10.0A0A1U8IHN1_GOSHI; zinc finger CCCH domain-containing protein 48-like
STRINGGorai.011G127400.11e-157(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18392869
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.11e-108zinc finger WD40 repeat protein 1