PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A10G1498

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C2H2

Protein Properties

Length: 198aa MW: 21312.8 Da PI: 10.1709

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A10G1498	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15	7.2e-05	48	70	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C++ F+++ L H++ H Gh_A10G1498 48 FECQYCHRGFPNSQALGGHQNAH 70 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.1E-6	44	75	No hit	No description
Pfam	PF13912	4.1E-6	47	72	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	11.365	48	75	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	50	70	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 198 aa Download sequence Send to blast
MSKAAISMSR SASENNGAGD ETGRNNQSSK LKLFGFPVAA TPCDNRRFEC QYCHRGFPNS 60 QALGGHQNAH KRERRAKLAS SFTAHHHQRF VTTGHVITAH SFRSRPSLYA RSGFTNLSPS 120 DEHAVVFRGP SPSCTPIILR GPRPLHVVGA QPSEGPFLVV QTEVGVGSTL DSLVAADVNE 180 EGNIDLRLRL PPSGTAST

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016676643.1	1e-144	PREDICTED: uncharacterized protein LOC107895977
TrEMBL	A0A1U8IJS9	1e-142	A0A1U8IJS9_GOSHI; uncharacterized protein LOC107895977
STRING	Gorai.011G195500.1	1e-121	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM24706	2	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58070.1	3e-13	C2H2 family protein