PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A10G1704

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C2H2

Protein Properties

Length: 254aa MW: 27717.9 Da PI: 8.5008

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A10G1704	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.2	2.9e-05	85	107	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+++Fs++ L H++ H Gh_A10G1704 85 FSCNFCNRVFSTSQALGGHQNAH 107 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	8.2E-5	79	111	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	5.88E-7	82	112	No hit	No description
Pfam	PF13912	8.6E-6	84	109	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	11.843	85	112	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	87	107	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence Send to blast
MVLILEDPSE VVSTKSADMA GSVPQQKLSS VVLDLMLSNR DDDGDDNGGA KPRRESKIEL 60 DLFTPRSPTN SSQHDGDHHD KSKVFSCNFC NRVFSTSQAL GGHQNAHKQE RALAKRRHQG 120 LMEVNPSRTF GTPNLPYHPF SAFPSNPFQE SYNRSPLSVR YESMVRKPTH PWPSMPSSLS 180 RQYHVPHGWS SSRQALMSLI QPSLSFNNGG LGMPGASTSA NLGLGQANVA MNRGSEGSDN 240 QCKDGAGIDL SLKL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017617970.1	1e-173	PREDICTED: zinc finger protein 6-like
TrEMBL	A0A2P5XHL0	1e-171	A0A2P5XHL0_GOSBA; Uncharacterized protein
STRING	Gorai.011G221900.1	1e-163	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM20134	4	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G01860.1	1e-17	C2H2 family protein